Locus 2562

Sequence ID X_DroMel_CAF1
Location 6,878,098 – 6,878,205
Length 107
Max. P 0.518068
window4187

overview

Window 7

Location 6,878,098 – 6,878,205
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.22
Mean single sequence MFE -22.78
Consensus MFE -9.11
Energy contribution -8.72
Covariance contribution -0.39
Combinations/Pair 1.36
Mean z-score -1.79
Structure conservation index 0.40
SVM decision value -0.03
SVM RNA-class probability 0.518068
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6878098 107 - 22224390
CGGCAUAUCAUAAAAGUUUCAGCAUCAAAAACCAAUGCCAAACUUUAAUUGGCUGAG------UUAAAAAACUAGUUCGGUAAUACUACCACGCUUU-------UUGGCUAUCAAAAAAU
((((........(((((((..((((.........)))).))))))).....))))((------((((((....(((..((((....))))..)))))-------)))))).......... ( -18.12)
>DroSec_CAF1 2492 105 - 1
CGGCA--UCAUAAAAGUUUCAGCAUUAAAAACCAAUGCCGAACUUUAAUUGGCUGAG------UUGAAAAACUAGUUCGGUCUUACUGCCACGAUUU-------UUGGCUAUCAAUAAAU
.((((--.....(((((((..(((((.......))))).)))))))....(((((((------((....)))....))))))....))))..(((..-------......)))....... ( -22.20)
>DroSim_CAF1 2559 96 - 1
CGGCA--UCAUAAAAGUUUCAGCAUCAAAAACCAAUGCCGAACUUUAAUUGGCUGAG------UUGAAAAGCUAGUUCGG---------CACGCUUU-------UUGGCUAUCAAAAAAU
((((.--..((.(((((((..((((.........)))).))))))).))..))))((------(..((((((........---------...)))))-------)..))).......... ( -22.30)
>DroEre_CAF1 2339 104 - 1
CUGCA--UCAUAAAAGUUGCAGCAGCCAAAACCAAUGCCAAACUUUAAUUGGCCGAG-------UUGGAAAAUAGUUCGGUCCUGCAACCACGUUUA-------UUGGCCAUCAAACAAU
(((((--.(......).)))))..(((((..((((((((((.......)))))...)-------))))..........(((......))).......-------)))))........... ( -23.90)
>DroYak_CAF1 3099 118 - 1
UUGUA--UUUUGAAAGUUUGAGCAGCCAAAACCAAUGCCAAACUUUCAUUAACCAAACUUUGAUUGAAAAAAUAGUUUGGUUUUGCUACCACGUUUUUUUUUGUUUGGCUAUCCAGCAAU
((((.--...((((((((((.(((...........)))))))))))))....((((((.......((((((((....((((......)))).))))))))..)))))).......)))). ( -27.40)
>consensus
CGGCA__UCAUAAAAGUUUCAGCAUCAAAAACCAAUGCCAAACUUUAAUUGGCUGAG______UUGAAAAACUAGUUCGGUCUUACUACCACGCUUU_______UUGGCUAUCAAAAAAU
............((((((...(((...........)))..))))))...(((((((.........(((.......)))(((......)))..............)))))))......... ( -9.11 =  -8.72 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:48 2006