Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,876,683 – 6,876,778 |
Length | 95 |
Max. P | 0.920166 |
Location | 6,876,683 – 6,876,778 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -17.99 |
Energy contribution | -19.30 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.14 |
Mean z-score | -2.11 |
Structure conservation index | 0.70 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6876683 95 + 22224390 AACCAGUUCAUUUAACUGAAGUGCGACUAAGCUGUGCAUU---GCGCUGCUCGAGCACUAAGUGAAUUAAUUUGCCUAUUCAGUUAAGUCGAAAUGAA ...((.((((((((((((((((((.....(((.((((...---)))).)))...)))))..(..((....))..)....)))))))))).))).)).. ( -27.80) >DroSec_CAF1 1185 95 + 1 AACCACUUCAUUUAACUGAAGUGCGACUAAGCUGUGCAUU---GCGCUGCUCCAGCACUAAGUGAAUUAAUUUGGAUAUUGACUUAAGUCGAGAUGAA ...(((((((......)))))))(((((..((((.(((..---....)))..)))).((((((......))))))...........)))))....... ( -25.50) >DroSim_CAF1 1215 95 + 1 AACCACUUCAUUUAACUGAAGUGCGACUAAGCUGUGCAUU---GCGCUGCUCCAGCACUAAGUGAAUUAAUUUAGCUAUUGACUUAAGUCGAGAUGAA ...(((((((......)))))))(((((..((((.(((..---....)))..))))..(((((.(((..........))).))))))))))....... ( -25.50) >DroYak_CAF1 1347 96 + 1 AGCCAGUUCAUUUAACUAAACUGCGACUAAGCGGCGCACUCGAGCAUUGCUACAGUACAAAUUA-G-UGACUAAUGUCGUGACUUAAGUCGAAAUGGC .((((.(((.............(((((..(((((.((......)).)))))..(((((......-)-).)))...)))))(((....)))))).)))) ( -23.80) >consensus AACCACUUCAUUUAACUGAAGUGCGACUAAGCUGUGCAUU___GCGCUGCUCCAGCACUAAGUGAAUUAAUUUAGCUAUUGACUUAAGUCGAAAUGAA ...(((((((......)))))))(((((.(((.((((......)))).))).(((..((((((......))))))...))).....)))))....... (-17.99 = -19.30 + 1.31)
Location | 6,876,683 – 6,876,778 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -15.76 |
Energy contribution | -15.95 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -1.85 |
Structure conservation index | 0.64 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6876683 95 - 22224390 UUCAUUUCGACUUAACUGAAUAGGCAAAUUAAUUCACUUAGUGCUCGAGCAGCGC---AAUGCACAGCUUAGUCGCACUUCAGUUAAAUGAACUGGUU .(((.((((..(((((((((...((..(((((.....)))))(((.(.(((....---..))).))))......))..))))))))).)))).))).. ( -20.10) >DroSec_CAF1 1185 95 - 1 UUCAUCUCGACUUAAGUCAAUAUCCAAAUUAAUUCACUUAGUGCUGGAGCAGCGC---AAUGCACAGCUUAGUCGCACUUCAGUUAAAUGAAGUGGUU .......(((((.((((.....((((.(((((.....)))))..))))(((....---..)))...)))))))))(((((((......)))))))... ( -25.20) >DroSim_CAF1 1215 95 - 1 UUCAUCUCGACUUAAGUCAAUAGCUAAAUUAAUUCACUUAGUGCUGGAGCAGCGC---AAUGCACAGCUUAGUCGCACUUCAGUUAAAUGAAGUGGUU .......((((((((((.(((..........))).)))))..((((..(((....---..))).))))..)))))(((((((......)))))))... ( -24.30) >DroYak_CAF1 1347 96 - 1 GCCAUUUCGACUUAAGUCACGACAUUAGUCA-C-UAAUUUGUACUGUAGCAAUGCUCGAGUGCGCCGCUUAGUCGCAGUUUAGUUAAAUGAACUGGCU ((((.((((((....)))..(((....)))(-(-(((.((((((((.(((..(((......)))..))))))).)))).))))).....))).)))). ( -28.20) >consensus UUCAUCUCGACUUAAGUCAAUAGCCAAAUUAAUUCACUUAGUGCUGGAGCAGCGC___AAUGCACAGCUUAGUCGCACUUCAGUUAAAUGAACUGGUU .......(((((.((((.........................((((...))))((......))...)))))))))(((((((......)))))))... (-15.76 = -15.95 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:47 2006