Locus 256

Sequence ID X_DroMel_CAF1
Location 859,228 – 859,336
Length 108
Max. P 0.500000
window387

overview

Window 7

Location 859,228 – 859,336
Length 108
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -31.13
Consensus MFE -23.42
Energy contribution -23.14
Covariance contribution -0.28
Combinations/Pair 1.20
Mean z-score -1.50
Structure conservation index 0.75
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 859228 108 + 22224390
CUGCACUGGAGUCGGAAAACAAAACAUUGUGUGUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAU----
.((((.((((((((((..((((....))))...)))..)))..)))).))))..............((((((((((((.(((.(...-..).))).))).)))))))))---- ( -29.20)
>DroSec_CAF1 62061 108 + 1
CUGCACUGGAGUCGGAAAACAAAACACUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAU----
(((.((....))))).........(((((((((.((((((((....(((((.....(((.....)))........)))))......)-).)))))))))))))))....---- ( -31.32)
>DroSim_CAF1 58245 112 + 1
CUGCACUGGAGUCGGAAAACAAAACACUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAUGUGG
(((.((....)))))...(((...(((((((((.((((((((....(((((.....(((.....)))........)))))......)-).)))))))))))))))...))).. ( -32.72)
>DroEre_CAF1 65266 109 + 1
CUGCACUAAAGUCUGAAAACAAAGCAUUGUGCAUCCAUGGCUGUUGGGCGCACAAUCAAUUACUUUGUUCCACCGUCAACAUUGUGUUGUCCAUGGUGCACGGUGGAAU----
..................((((((.(((((((..(((.......)))..)))))))......))))))((((((((...(((..((.....))..))).))))))))..---- ( -34.20)
>DroYak_CAF1 61477 98 + 1
CUGCUCUGAAGUCUGAAAACAAAACAUUUUGUAUUCAUGGCAGC-----------UCAAUUACUUUGUUCCACCAUCAGCAUUGUGUUGCCCAUGGUGCACGGUGGAAU----
..(((.....(((((((.(((((....))))).)))).))))))-----------...........((((((((....((((..((.....))..))))..))))))))---- ( -28.20)
>consensus
CUGCACUGGAGUCGGAAAACAAAACAUUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU_GUCCAUGGUGCACGGUGGAAU____
........................(((((((((.(((((((.((.....)).........(((..((((........))))..)))..).)))))))))))))))........ (-23.42 = -23.14 +  -0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:07 2006