Locus 2555

Sequence ID X_DroMel_CAF1
Location 6,859,716 – 6,859,836
Length 120
Max. P 0.509389
window4167

overview

Window 7

Location 6,859,716 – 6,859,836
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -43.04
Consensus MFE -38.64
Energy contribution -38.48
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.14
Structure conservation index 0.90
SVM decision value -0.05
SVM RNA-class probability 0.509389
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6859716 120 - 22224390
GAAGUCAUCCGACUCGUUGCCGGCAUCGUAGUUGGUGCGCAUGUUCUCCGAUUUCUGGAGGGACGCAUAGCUGCGCAGCUCCGCCUCCAGCUCACGCUGCUUGGCAGCCUCCUUCUCCUG
((.(((....)))))((((((((((.(((((((((.((((...(((((((.....)))))))..))..((((....))))..))..)))))).))).))).)))))))............ ( -44.90)
>DroSec_CAF1 2880 120 - 1
GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUUCGCAGCUCCGCCUCCAGCUCCCGUUGCUUGGCAGCCUCCUUCUCCUG
((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... ( -39.40)
>DroSim_CAF1 2880 120 - 1
GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUUCGCAGCUCCGCCUCCAGCUCCCGUUGCUUGGCAGCCUCCUUCUCCUG
((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... ( -39.40)
>DroEre_CAF1 2959 120 - 1
GAAGUCAUCCGAUUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGUCUUCUGGAGGGACGCAUAGCUGCGAAGCUCCGCCUCCAGCUCCCGCUGCUUGGCGGCCUCCUUCUCCUU
((((..................((.(((((((((.((((....(((((((.....))))))).))))))))))))).)).(((((..((((....))))...)))))....))))..... ( -44.40)
>DroYak_CAF1 2967 120 - 1
GAAGUCAUCCGACUCGUUACCGGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUGCGUAGCUCCGCCUCCAGCUCCCGCUGCUUGGCGGCCUCCUUCUCCUG
((((((....(((.(((.((((((......)))))))))...)))....)))))).(((((.(((((....)))))....(((((..((((....))))...))))))))))........ ( -47.10)
>consensus
GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUGCGCAGCUCCGCCUCCAGCUCCCGCUGCUUGGCAGCCUCCUUCUCCUG
((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... (-38.64 = -38.48 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:31 2006