Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,859,473 – 6,859,568 |
Length | 95 |
Max. P | 0.791366 |
Location | 6,859,473 – 6,859,568 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -29.32 |
Energy contribution | -29.36 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.29 |
Structure conservation index | 0.91 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6859473 95 - 22224390 AUGCGACGCACCGCCUUCUCGUUGUGGUAGGCCACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGAUUCUCCCACAUGGUGUACACCACCUC ..(((......))).........(((((.((((....))))(..(.((((((..(((((((.....)))))))...)))))).)..))))))... ( -33.10) >DroSec_CAF1 2637 95 - 1 AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC ..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -32.20) >DroSim_CAF1 2637 95 - 1 AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGACCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC ..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -33.10) >DroEre_CAF1 2716 95 - 1 AUGCGAUGCACCGCCUUCUCGUUGUGGUAGGAUACUUGGCCGGGCGCCAUGUCCGGUGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC ..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. ( -29.80) >DroYak_CAF1 2724 95 - 1 AUGCGACGCACCGCCUUCUCGUUGUGGUACGCCACCUGGCCGGGCUCCAUGUCCGGCGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC ..(((......))).........(((((((((((..(((((((((.....)))))))..........((....))))..))))))..)))))... ( -32.60) >consensus AUGCGACGCACCGCCUUCUCGUUGUGGUAGGACACCUGGCCGGGCUCCAUGUCCGGGGUCUUCUUCAGGUUCUCCCACAUGGUGUACACCACCUC ..(((......)))........(((((.(((..((((((..(((((((......)))))))...))))))))).))))).((((.....)))).. (-29.32 = -29.36 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:30 2006