Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,843,179 – 6,843,283 |
Length | 104 |
Max. P | 0.955531 |
Location | 6,843,179 – 6,843,283 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.81 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -26.20 |
Energy contribution | -27.80 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.19 |
Mean z-score | -2.33 |
Structure conservation index | 0.77 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6843179 104 + 22224390 ACGGGGGGUUAAAUGCAUCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGACAUUAAAACUAAAUCAUAAAUCUUGGGUGUGCC----------AAACAGGCUUAACCCCAGA ..((..((((.(((((((((((((((.(....).))).....)))).)))).))))..))))...)).....(((.((((..(((----------.....)))...)))).))) ( -33.10) >DroSec_CAF1 23153 106 + 1 ACGGGGGGUUAAAUGCAGCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGAAAU------UAAAUCAUAAAUCUUGGUUGUGUCGCCGAAA--AAAACAGGCUUAACCCCAGA ....((((((((..((..((((.(((.(....).)))((((..(((((((.....------..........))).))))..))))))))...--.......))))))))))... ( -36.36) >DroSim_CAF1 23218 107 + 1 ACGGGGGGUUAAAUGCAGCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGAAAU------UAAAUCAUAAAUCUGGGUUGUGUCGCUGAAAA-AAAACAGGCUUAACCCCAGA ....((((((((.(((((((((((((.(....).))).......((((((.....------..........))))))....))))))))....-....))...))))))))... ( -36.36) >DroEre_CAF1 23530 114 + 1 ACGGGGGGUUAAAUGCAUCGCCAGACUCGAGAGCGUCGGCGUUGCCAGAUGACAUUAAUAUUAAAUCAUAAAUCUCGGCGAUGCUGCUGAAAACAAAACAGGCUUAACACCAGA ..((...(((((..((((((((.(((.(....).)))(((...)))..............................)))))))).(((............)))))))).))... ( -31.50) >DroYak_CAF1 24051 114 + 1 ACGGGGGGUUAAAUGCAUCGGCAGACUCGUAAGCGUCAGCGUUGCCAGAUGACAUUAAAAUUUAAACAUAAAUCUCGGUUAUGCUGGUGAAAAAUCCACAAGCUUAACCCCAGA ....((((((((..((....((.(((.(....).))).)).(..(((((((((......(((((....)))))....))))).))))..)...........))))))))))... ( -33.40) >consensus ACGGGGGGUUAAAUGCAUCGGCAGACUCGUGAGCGUCGGCGUUGCCAGAUGACAUUAA_A_UAAAUCAUAAAUCUCGGUUGUGCCGCUGAAAA_AAAACAGGCUUAACCCCAGA ....((((((((..((.......(((.(....).)))(((((.(((((((.....................)))).))).)))))................))))))))))... (-26.20 = -27.80 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:28 2006