Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,842,205 – 6,842,323 |
Length | 118 |
Max. P | 0.555068 |
Location | 6,842,205 – 6,842,323 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -36.86 |
Consensus MFE | -24.94 |
Energy contribution | -26.38 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.96 |
Structure conservation index | 0.68 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6842205 118 + 22224390 UAGCCUCGAAAAGUGAUGUCUGCCGAGUGGGACCUUCAGACAUCCCCAAUGUCCGAUCAUAUCAGGCCCGAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCACUUCGGUUC-C .......(((..(...((..(((((..((((.(((((.(((((.....))))).)).......)))))))(((((...)-))))(((((....)))))..)))))..))...)..)))-. ( -35.11) >DroSec_CAF1 22218 118 + 1 UGGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGACCGAUCAUAUCAGGGCCAAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCAUUUCGGUUC-C .((..(((((((((((((((((..(((......)))))))))))((..((((....))))....))(((.(((((...)-))))(((((....)))))...)))..)))))))))..)-) ( -37.60) >DroSim_CAF1 22257 118 + 1 UGGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACACCUCCAAUGUCCGAUCAUAUCAGGCCCAAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCAUUUCGGUUC-C .((..(((((((((......((((...((((.(((((.((((.......)))).)).......)))))))(((((...)-))))(((((....)))))...)))).)))))))))..)-) ( -36.81) >DroEre_CAF1 22577 117 + 1 UAGCAUCGAACCGUGAAGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGUCCGACCAUAUCA---CCCAGAUCUACGAAUCUGGUGUUAUAACACCCACGGCAAGCAGUUCGGUUCCC .......((((((....(..((((..(((((....((.(((((.....))))).))...(((.(---(((((((......)))))).)).)))...)))))))))..)....)))))).. ( -39.20) >DroYak_CAF1 23024 116 + 1 UAGCCUCGAAAUGCGAAGUCUGGCAAGUGGGACGUCUGAAGGUCCCCAAUGUCCGACCAUAUCA---UCCAGAUCUACG-AUCUGGUGUUAUAACACCCACGGCAGGCAGUUCGGUUCCC .(((((((.....))).(((((.(..(((((.........((((..........))))(((.((---.(((((((...)-)))))))).)))....)))))).))))).....))))... ( -35.60) >consensus UAGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGUCCGAUCAUAUCAGG_CCAAGAUCUACG_AUCUGGUGUUAUAACACCAACGGCAAGCAGUUCGGUUC_C .....(((((((((((((((((..(((......))))))))))).....((.(((...............((((......))))(((((....)))))..))))).)))))))))..... (-24.94 = -26.38 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:27 2006