Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,833,165 – 6,833,268 |
Length | 103 |
Max. P | 0.545011 |
Location | 6,833,165 – 6,833,268 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -31.13 |
Consensus MFE | -20.65 |
Energy contribution | -22.23 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.66 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6833165 103 + 22224390 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCAAGCUGGCCACCACGAUCUCGGUGACAGCCACGCCCAUAAAAGA .......(((....(((.((((((....)))))).))).((-(((....((.......))..((((..((((........)))).))))...)))))...))). ( -34.00) >DroVir_CAF1 153630 92 + 1 GUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG--UCAUGCGGCGCUAAUUUGGCU-CUACGCCUGGA-----CGGACAACACCACCCAAA-A--- ....((((((....(((.((((((....)))))).)))..(--((..(((..(((.....))).-...)))...))-----)))))))...........-.--- ( -29.10) >DroSim_CAF1 13367 101 + 1 GUAAUUGCUUAAAUUGAAAUCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCGAGCUGGACACCACGAUCUCGGUGACAGAGUCGCCCAUA--AGA .....(((((((..(((...((((....))))...))))))-)))).(((((.((......))(((..((((........)))).))).))))).....--... ( -28.20) >DroEre_CAF1 13503 102 + 1 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUUGAGCUGGCCACCCCGAUCUCGGUGACAGCCACGCCCUUA-AAGA ((...(((((((..(((.((((((....)))))).))))))-))))....)).......((.((((..((((........)))).))))))........-.... ( -33.00) >DroYak_CAF1 13676 103 + 1 GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG-GGCAUGCGACACUAAUUCAAGCUGGCCACCACGAUCUCGGUGACAACCACGCCCUUAAAAGA ((...(((((((..(((.((((((....)))))).))))))-))))....))..........(((((.((((........))))....))).)).......... ( -29.60) >DroAna_CAF1 16496 102 + 1 GUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGGGCAUGCGACACUAAUUCGAGCUGGGCA--ACGAUCUCUGUGACAGCCACGCCCUAAAAACG ..............(((.((((((....)))))).)))(((((((...............(((.(.(...--.).).))).(((.....))))))))))..... ( -32.90) >consensus GUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUG_GGCAUGCGACACUAAUUCGAGCUGGCCACCACGAUCUCGGUGACAGCCACGCCCAUA_AAGA ((...((((.....(((.((((((....)))))).)))....))))....))..........((((..((((........)))).))))............... (-20.65 = -22.23 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006