Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,827,001 – 6,827,105 |
Length | 104 |
Max. P | 0.967557 |
Location | 6,827,001 – 6,827,105 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.15 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -25.79 |
Energy contribution | -25.57 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.23 |
Structure conservation index | 0.91 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.857842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6827001 104 + 22224390 UCCAAGCCGUGCUCUCUCGCUGCGCUCGCAGCGAAACAGCUGGCUAUGAAACUUCAAUUACUAGCAUGCGUAAGCAUUUUUGAUUUUACGUUUUUAAUGAAAAA ..(((((((.(((.(.(((((((....))))))).).)))))))).))....((((.(((..(((((((....))))....(......))))..)))))))... ( -30.10) >DroSec_CAF1 7237 103 + 1 UCCAAGCUGUGCUCUCUCGCUGCGCUUGCAGCGAAACAGCUGGCUAUGAAACCUCAAUUACUAGCAUGCGUAAGCAUUUUUGAUUUUACGUUUUUAAUGAAG-C ....((((((......(((((((....))))))).)))))).(((((((....))).....))))((((....))))............(((((....))))-) ( -27.50) >DroSim_CAF1 7250 104 + 1 UCCAAGCUGUGCUCUCUCGCUGCGCUUGCAGCGAAACAGCUGGCUAUGAAACCUCAAUUACUAGCAUGCGUAAGCAUUUUUGAUUUUACGUUUUUAAUGAAAAC ....((((((......(((((((....))))))).)))))).(((((((....))).....))))((((....))))............((((((...)))))) ( -27.00) >consensus UCCAAGCUGUGCUCUCUCGCUGCGCUUGCAGCGAAACAGCUGGCUAUGAAACCUCAAUUACUAGCAUGCGUAAGCAUUUUUGAUUUUACGUUUUUAAUGAAAAC ..(((((((.(((.(.(((((((....))))))).).)))))))).)).........(((.(((...((((((.((....))...))))))..))).))).... (-25.79 = -25.57 + -0.22)
Location | 6,827,001 – 6,827,105 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 96.15 |
Mean single sequence MFE | -32.03 |
Consensus MFE | -29.72 |
Energy contribution | -29.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.86 |
Structure conservation index | 0.93 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6827001 104 - 22224390 UUUUUCAUUAAAAACGUAAAAUCAAAAAUGCUUACGCAUGCUAGUAAUUGAAGUUUCAUAGCCAGCUGUUUCGCUGCGAGCGCAGCGAGAGAGCACGGCUUGGA ..(((((........(......)....((((....)))).........))))).((((.((((.(((.(((((((((....))))))))).)))..)))))))) ( -31.30) >DroSec_CAF1 7237 103 - 1 G-CUUCAUUAAAAACGUAAAAUCAAAAAUGCUUACGCAUGCUAGUAAUUGAGGUUUCAUAGCCAGCUGUUUCGCUGCAAGCGCAGCGAGAGAGCACAGCUUGGA .-...................((((..((((....))))(((.((......((((....)))).(((.(((((((((....))))))))).)))))))))))). ( -31.80) >DroSim_CAF1 7250 104 - 1 GUUUUCAUUAAAAACGUAAAAUCAAAAAUGCUUACGCAUGCUAGUAAUUGAGGUUUCAUAGCCAGCUGUUUCGCUGCAAGCGCAGCGAGAGAGCACAGCUUGGA (((((.....)))))......((((..((((....))))(((.((......((((....)))).(((.(((((((((....))))))))).)))))))))))). ( -33.00) >consensus GUUUUCAUUAAAAACGUAAAAUCAAAAAUGCUUACGCAUGCUAGUAAUUGAGGUUUCAUAGCCAGCUGUUUCGCUGCAAGCGCAGCGAGAGAGCACAGCUUGGA .....................((((..((((....))))(((.((......((((....)))).(((.(((((((((....))))))))).)))))))))))). (-29.72 = -29.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:24 2006