Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,826,116 – 6,826,220 |
Length | 104 |
Max. P | 0.888385 |
Location | 6,826,116 – 6,826,220 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -20.08 |
Energy contribution | -20.84 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.78 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6826116 104 + 22224390 CAAUUCCAAUUGGCUCCAAGGGGCUUUAAUCAAAAUGAUGCCUCGGGGCUGACAUC-----UCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCACU .........(((....)))((((...........(((((.(((((((..(((....-----....)))..))))))).)))))...----.(((((....))))).))))... ( -26.80) >DroSec_CAF1 6370 104 + 1 CAGAUCCAAUUGGCUCCAAUAGGCUUUAAUCAAAAUCAUGCCUCGAGGCUGACAUC-----CCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCAAU ..(((((..(..((..(...((((...............)))).)..))..)...(-----(((........))))))))).....----.(((((....)))))........ ( -24.56) >DroSim_CAF1 6374 104 + 1 CAGAUCCAAUUGGCUCCAAUGGGCUUUAAUCAAAAUGAUGCCUCGAGGCUGACAUC-----UCGCUUAAUCUCGGGGGAUCGUAUU----AUAGUUAUACAACUAAUCCCAAU ..((.((....)).))...((((...........(((((.(((((((..(((....-----....)))..))))))).)))))...----.(((((....)))))..)))).. ( -28.10) >DroEre_CAF1 6680 101 + 1 CAAUACCAAUUGACUCAAAUGGGCUUUAAUCAAAAUGAUGCCCCGAGGCUGAC--------UCGUUUAAUCUCGGGGGAUCGUCUU----AUAGUUAUACAACUAAUCCCCAC ((((....)))).......((((...........(((((.(((((((..(((.--------....)))..))))))).)))))...----.(((((....)))))...)))). ( -28.70) >DroYak_CAF1 6549 113 + 1 CAAUUCCAAUUGGCUCCAAUAAGCUUUAAUCAAAAUGAUGCCUCGCGGCUGACAUCUCAUUUCGUCUAAUCUCGGGGGAUCGUCUUUUAAAUAGUUAUACAACUAAUCCCAAC .........((((...........(((((.....(((((.(((((.((..(((..........)))...)).))))).)))))...)))))(((((....)))))...)))). ( -20.10) >consensus CAAUUCCAAUUGGCUCCAAUGGGCUUUAAUCAAAAUGAUGCCUCGAGGCUGACAUC_____UCGCUUAAUCUCGGGGGAUCGUAUU____AUAGUUAUACAACUAAUCCCAAU ...........(((((....))))).........(((((.(((((((..(((.............)))..))))))).)))))........(((((....)))))........ (-20.08 = -20.84 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:22 2006