Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,822,359 – 6,822,454 |
Length | 95 |
Max. P | 0.534439 |
Location | 6,822,359 – 6,822,454 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 74.57 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -15.90 |
Energy contribution | -17.18 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.16 |
Structure conservation index | 0.63 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6822359 95 - 22224390 GUCAACACGUUCUGCUGGAUCCACAGCACUUUCACCAUGCCGGACGCUUUUCGCAGACAGGUGAGUUGGGGAUUCGGAUGGGAAU----UGAAUGUUCA ......(((((((((((......)))))..(((.((((.((((((.((.(((((......)))))..)).).)))))))))))).----.))))))... ( -30.70) >DroPse_CAF1 3364 74 - 1 GUGAACACGUUCUGCUGGAUCCACAGCACGUUCACCAUGCCGGAUGCGUUUCGCAGACAGGUAAGA-------------------------ACUCUCCA ((((((......(((((......))))).))))))..(((((..((((...))))..).))))...-------------------------........ ( -21.20) >DroSec_CAF1 2642 95 - 1 GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGACGCCUUUCGCAGACAGGUGAGUUGGGGAUUUGGAUGGAAAU----CGAAUGUUUC ......(((((((((((......)))))......((((.((((((.((.(((((......)))))..)).).)))))))))....----.))))))... ( -29.40) >DroSim_CAF1 2678 84 - 1 GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCCUUUCGCAGACAGGUGAGUUGGGGAUUCGG---------------AUUUUUC ..............((((((((.((((....(((((.(((.(((.....))))))....))))))))).))))))))---------------....... ( -24.60) >DroAna_CAF1 3606 99 - 1 GUGAACACCUUUUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCUUUCCGCAGACAGGUGAGUUUAUUAUUUUAAUAACUAUAACUAAAAUUUACA ((((((......(((((......)))))...(((((.(((.(((.....))))))....)))))))))))............................. ( -23.50) >DroPer_CAF1 3137 74 - 1 GUGAACACGUUCUGCUGGAUCCACAGCACGUUCACCAUGCCGGAUGCGUUUCGCAGACAGGUAAGA-------------------------ACUCUCCA ((((((......(((((......))))).))))))..(((((..((((...))))..).))))...-------------------------........ ( -21.20) >consensus GUCAACACGUUCUGCUGGAUCCACAGCACCUUCACCAUGCCGGAUGCCUUUCGCAGACAGGUGAGUUGGGGAUU_GG______________AAUCUUCA .(((((......(((((......)))))...(((((.(((.(((.....))))))....)))))))))).............................. (-15.90 = -17.18 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:18 2006