Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,821,132 – 6,821,337 |
Length | 205 |
Max. P | 0.995269 |
Location | 6,821,132 – 6,821,222 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.43 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -16.56 |
Energy contribution | -16.90 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -3.10 |
Structure conservation index | 0.60 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6821132 90 + 22224390 AACCGAGAUAGGUGUAAAUUUGAAAUUUACUCACACCAUAGAGAUAUGAUAAUUGUAUGUGCAAUUGAAACAUGUGAUUAUCAAGUUUCA----------------------------- .(((......)))((((((.....))))))..........(((((.(((((((..(((((.........)))))..))))))).))))).----------------------------- ( -23.80) >DroSec_CAF1 1503 119 + 1 AAACGAGAUAGGUGUAAAUUUGAGAUUUACUCACACCACAGAGAUAUGAUAAUUGUAUGUGCAAUUGAUAUGUGUGAUUACCAAGUUUCAGAUCAACAUCUUUCUGUCUUUAUAACACA .....(((.((((((..(((((((((((..((((((..((......)).(((((((....)))))))....)))))).....)))))))))))..)))))).))).............. ( -28.40) >DroSim_CAF1 1517 119 + 1 AAACGAGAUAGGUGUAAAUUUGAGAUUUGCUCACACCAUAGAGAUAUGAUAAUUGUAUGUGCAAUUGAUAUGCGUGAUUACCAAGUUUCAGAUCAACAUCUUUCUGUCUUUAUAAUACA .....(((.((((((..((((((((((((.((((..((((....)))).(((((((....)))))))......))))....))))))))))))..)))))).))).............. ( -30.50) >consensus AAACGAGAUAGGUGUAAAUUUGAGAUUUACUCACACCAUAGAGAUAUGAUAAUUGUAUGUGCAAUUGAUAUGUGUGAUUACCAAGUUUCAGAUCAACAUCUUUCUGUCUUUAUAA_ACA ....(((((.((((((((((...)))))))((((((((((....)))).(((((((....)))))))....))))))..)))..))))).............................. (-16.56 = -16.90 + 0.34)
Location | 6,821,222 – 6,821,337 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 74.24 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -20.12 |
Energy contribution | -19.57 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.27 |
Mean z-score | -0.92 |
Structure conservation index | 0.73 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6821222 115 - 22224390 GGCCAAUGAUUUUGGCGACGAGGAUGCCAAGAAGUACUACACCUACUACCAGUGGGUGUGCUUCGUGCUUUUCUUCCAGGUGAGUUUCGUAGCA--UAAGAUUUUACUUCUAGAUUC .(((((.....))))).............(((((((..((((((((.....))))))))(((.((.((((.((.....)).))))..)).))).--........)))))))...... ( -33.90) >DroEre_CAF1 1777 107 - 1 GGCCAAUGACUUUGGCGAUGAGGAUGCCAAGAAGUACUACACCUACUAUCAGUGGGUGUGCUUCGUGCUUUUCUUCCAGGUGAGUUUCGCAUUUACUUCUA---C-------GAUUC .(((((.....)))))...(((((.((...(((((...((((((((.....)))))))))))))..))...))))).((((((((.....))))))))...---.-------..... ( -33.90) >DroWil_CAF1 1936 96 - 1 GGCCAAUGAUUUUGAUGACGAAGAUGCCAAGAAAUAUUAUACCUACUAUCAAUGGGUUUGCUUUGUGCUCUUCUUUCAGGUAAGUGUCGGCGGA--GA------------------- .(((.((.((((...(((.(((((.((((((.........(((((.......)))))....)))).)))))))..)))...)))))).)))...--..------------------- ( -18.12) >DroYak_CAF1 1643 105 - 1 GGCCAAUGAUUUUGGCGAUGAGGAUGCCAAGAAGUACUACACCUACUACCAGUGGGUCUGCUUCGUGCUUUUCUUCCAGGUGAGUUUCCUAUCU--UAAGG---C-------ACUUC .(((((.....)))))...((((.((((..((((((....((((((.....)))))).))))))..((((.((.....)).)))).........--...))---)-------))))) ( -31.10) >DroAna_CAF1 2282 96 - 1 GGCCAAUGACUUUGGUGACGAAGAUGCCAAGAAAUACUACACCUACUACCAAUGGGUGUGCUUUGUGCUCUUCUUCCAGGUGAGUUAUAUA---------------CUCCU------ .(((((.....)))))((.(((((.((((((......((((((((.......)))))))).)))).))))))).))..((.((((.....)---------------)))))------ ( -24.90) >DroPer_CAF1 1625 95 - 1 GUCCAAUGAUUUCGGAGACGAGGAUGCCAAGAAAUACUAUACCUACUACCAGUGGGUAUGCUUUGUGCUCUUCUUUCAGGUGAGUAA-AUA---------------GUCUG------ ((((.......(((....)))))))....(((.....(((((((((.....)))))))))((...(((((.((.....)).))))).-..)---------------)))).------ ( -23.91) >consensus GGCCAAUGAUUUUGGCGACGAGGAUGCCAAGAAAUACUACACCUACUACCAGUGGGUGUGCUUCGUGCUCUUCUUCCAGGUGAGUUUCGUA_____UA___________________ .(((((.....)))))((.(((((.((...(((....(((((((((.....))))))))).)))..))))))).))......................................... (-20.12 = -19.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:17 2006