Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,808,137 – 6,808,244 |
Length | 107 |
Max. P | 0.553171 |
Location | 6,808,137 – 6,808,244 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.17 |
Mean single sequence MFE | -39.87 |
Consensus MFE | -25.20 |
Energy contribution | -26.53 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.18 |
Mean z-score | -1.78 |
Structure conservation index | 0.63 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6808137 107 - 22224390 AUUGACUCCACCCAAAAUGCGUCUUGUAGUGCCGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUAAGGCGCUGCAGGGCGUUAGGGAAUUUGGCCUUGUUUUUGGCUA ..........(((.....((((((((((((((((((((...(((......)))...)))))....)))))))))))))))..)))....(((((........))))) ( -43.90) >DroPse_CAF1 91391 95 - 1 AGAGUG----GGCAAAGUGCGCCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCGAAGAGCUUCAAGCGCUGAAGUG--UU-GGAAACUUGGCCCUGGUCCU----- .((.((----(((.(((((((((....))))).(((((.......)))))..((((...((((((.....)))))).--))-))..)))).)))).).))..----- ( -35.00) >DroSec_CAF1 77106 107 - 1 AUUGACUCCACCCAAAAUGCGUCUUGUCGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAAGGCGUUGGGGAAUUUGGCCUUGUUUUUGGCUA ..........((((....(((((((((.(((((((......))((((..((.....))..)))).))))).))))))))))))).....(((((........))))) ( -40.20) >DroEre_CAF1 22960 107 - 1 AUUGAUGCCACCCAAAGUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUUAGGCGCUGCAGGGCGUUGGGAAAUUUGGCCUUGUUUUUGGCUA ..........((((....((((((((..((((((((((...(((......)))...)))))....)))))..)))))))))))).....(((((........))))) ( -42.20) >DroYak_CAF1 71369 107 - 1 AUUGAUGCCACCCAAAAUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAGGGCGUUGGGGAAUUUGGCCUUGCUUUUGGCUA ..........((((....((((((((..(((((((......))((((..((.....))..)))).)))))..)))))))))))).....(((((........))))) ( -42.90) >DroPer_CAF1 104662 95 - 1 AGAGUG----GGCAAAGUGCGCCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCGAAGAGCUUCAAGCGCUGAAGUG--UU-GGAAACUUGGCCCUGGUCCU----- .((.((----(((.(((((((((....))))).(((((.......)))))..((((...((((((.....)))))).--))-))..)))).)))).).))..----- ( -35.00) >consensus AUUGAC_CCACCCAAAAUGCGUCUUGUGGUGCUGCUCUCCCGCGAAGAGCUGCCAAAGAGCUUCAGGCGCUGCAGGGCGUUGGGAAAUUUGGCCUUGUUUUUGGCUA ...........(((((..((((((((((((((((((((...(((......)))...)))))....))))))))))))))).......)))))............... (-25.20 = -26.53 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:15 2006