Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,805,529 – 6,805,643 |
Length | 114 |
Max. P | 0.965282 |
Location | 6,805,529 – 6,805,643 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -38.67 |
Consensus MFE | -26.59 |
Energy contribution | -27.90 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.09 |
Mean z-score | -2.41 |
Structure conservation index | 0.69 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6805529 114 + 22224390 ACCAAGGAUGAAGGAUGCCAGACUCGGGGAGCCAGGUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCCGGCAUCCAGGCAUCCUGCCAUCCGGAU .((..(((((.((((((((.(((((((((((((....).))))))).(((...........)--)).....))))).(((.........))).....))))))))..))))))).. ( -48.00) >DroSec_CAF1 74716 114 + 1 ACCAAGGAUGAAGGAUGCCCGGCUCGAGGAGCCAGGUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCAGGCAUCCAGGCAUCCUGCCAUCCGGAU .((..(((((.((((((((.(((((((((((((....).))))))).(((...........)--)).....))))).(((.........))).....))))))))..))))))).. ( -47.50) >DroEre_CAF1 20405 92 + 1 ACCAAGAAUGAAUGAUGCC--------------AGCUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCA--------GGCAUCCUGCCAUCCGGAU .((.....(((..(((((.--------------.(((.((((((((...(((.....)))..--)))))))))))..).))))...)))--------(((.....)))....)).. ( -25.80) >DroYak_CAF1 67488 94 + 1 ACCAAGAAUGAGGGAUGUC--------------AGGUGCGCUUCUCACCUGUCAUUUGCAAAAGGGGAAGUGAGUCAGGCAUCCAGUCA--------GGCAUCCUGCCAUCCGGAU .((.....(((.(((((((--------------.((..((((((((...(((.....)))....))))))))..)).)))))))..)))--------(((.....)))....)).. ( -33.40) >consensus ACCAAGAAUGAAGGAUGCC______________AGGUGCGCUUCUCACCUGUCAUUUACAAA__GGGAAGUGAGUCAGCCAUCCAGUCA________GGCAUCCUGCCAUCCGGAU .((..(((((.((((((((.(((((...))))).((..((((((((...(((.....)))....))))))))..)).....................))))))))..))))))).. (-26.59 = -27.90 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:14 2006