Locus 254

Sequence ID X_DroMel_CAF1
Location 855,314 – 855,408
Length 94
Max. P 0.642788
window385

overview

Window 5

Location 855,314 – 855,408
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.90
Mean single sequence MFE -22.48
Consensus MFE -16.82
Energy contribution -16.86
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.23
SVM RNA-class probability 0.642788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 855314 94 - 22224390
UUCGAAAUUCAGAGGUCGGAAGACCGGGCUGAUUGAAAUAGAUGACCAUGUCCAAGCAGCAUUACACUGAAAGAAAUAU--CGCCAUUAAAAAG----CA
(((....(((((.((((....))))..((((.(((.....(((......)))))).))))......))))).)))....--.............----.. ( -20.90)
>DroSec_CAF1 58137 94 - 1
UUCGAAAUUCAGAGGUCGGAAGACCGGGCUGAUUGAAAUAGAUGAGCAUGUCCAAGCAGCAUUACAUUGAAAGAAAUAU--CACCAUUGAAAAG----CA
.......(((((.((((....))))((((((.(((.....(((......)))))).)))).......(((.(....).)--)))).)))))...----.. ( -21.30)
>DroSim_CAF1 54287 94 - 1
UUCGAAAUUCAGAGGUCGGAAGACCGGGCUGAUUGAAAUCGAUGAGCAUGUCCAAGCAGCAUUACAUUGAAAGAAAUAU--CACCAUUGAAAAG----CA
(((((...((((.((((....))))...))))))))).((((((.((.(((....))))).......(((.(....).)--)).))))))....----.. ( -24.70)
>DroEre_CAF1 58104 94 - 1
UUCGAAAUUCAGAGGUCGAAAGACCGUGCUGAUUGAAAUAGAUGAGCAUGUCCAAGCAGCACUACAUGGAAAGAAAUAU--CGCCAUAAAAAAG----UC
.............((((....))))((((((.(((.....(((......)))))).))))))...((((...((....)--).)))).......----.. ( -23.40)
>DroYak_CAF1 57079 100 - 1
UUCGGAAUUCAGAGGUCGGCAGACCGGGCUGAUUGAAAUAGAUGAGCAUGUCCAAGCAGCAUUACACGAAAAGAAAUCUAAGGCCAUCUAAAAGCGAACC
((((....((((.((((....))))...))))......((((((.((((((.......)))).........((....))...))))))))....)))).. ( -22.10)
>consensus
UUCGAAAUUCAGAGGUCGGAAGACCGGGCUGAUUGAAAUAGAUGAGCAUGUCCAAGCAGCAUUACAUUGAAAGAAAUAU__CGCCAUUAAAAAG____CA
(((((...((((.((((....))))...)))))))))...((((....(((....))).))))..................................... (-16.82 = -16.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:05 2006