Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,770,282 – 6,770,380 |
Length | 98 |
Max. P | 0.544643 |
Location | 6,770,282 – 6,770,380 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.84 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -19.16 |
Energy contribution | -18.50 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.07 |
Mean z-score | -1.17 |
Structure conservation index | 0.86 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6770282 98 - 22224390 ----------------------UUUUGGCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC ----------------------...........(((((((........(((..((....))..)))..((((((....(((((((.........)))))))))))))..))))))).... ( -19.90) >DroEre_CAF1 58923 97 - 1 ----------------------UUUU-GCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC ----------------------...(-((((((((........)))(((.....(((((....)))))((((((....(((((((.........))))))))))))).)))))))))... ( -20.60) >DroAna_CAF1 74897 120 - 1 CCUCGUGCCUCUCCACAUCCUCUUGUGUCGUUGCCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAAUC ....(((......))).......((((.((..((((.....))))..))....)))).((((((.(..((((((....(((((((.........)))))))))))))...).)))))).. ( -26.20) >consensus ______________________UUUUGGCAAUGGCAAUUUCUGGUCUCGUUCUCAUAUUUGUAAAUAUUUGCAUUUUUACGCUUGUCGCCCACUCGAGCGUGUGCAAUCGAAUUGCAUUC .............................((((.((((((........(((..((....))..)))..((((((....(((((((.........)))))))))))))..)))))))))). (-19.16 = -18.50 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:09 2006