Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,768,371 – 6,768,464 |
Length | 93 |
Max. P | 0.505157 |
Location | 6,768,371 – 6,768,464 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.45 |
Mean single sequence MFE | -39.43 |
Consensus MFE | -21.81 |
Energy contribution | -21.70 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.55 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6768371 93 - 22224390 CAAGUUGCUGGUUGCCAGUUGCUG-GUUGCC--------------------------GGCUGCUGAUGUUGCUGUAAUGCCGUAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA ..(((.((((((.(((((...)))-)).)))--------------------------))).)))...((..(((....(((.((......)).)))..)))..))((.........)).. ( -32.20) >DroEre_CAF1 57164 108 - 1 CAAGUUGCUGGUUGCCAGUUGCUG-GUUGCC-----------AGUUGCUGGUUGCCAGGCUGCUGAUGUUGCUGUAAUGGCGUAAGCUUAUGGGGCUUUAGUGGCGCUUAUCACAUGCCA .((((..(((((.((((((.((((-(...))-----------))).)))))).)))))((..((((....(((.((..(((....)))..)).))).))))..))))))........... ( -45.60) >DroAna_CAF1 72486 120 - 1 CAAGUUGCUGGUUGCAAGUUCCAGAGUUGCCUGGAUUGCCUGGGUUGCCUGGUUUCUGGCCGCUGAUGUUGCUGUAAUGCCGCAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA .....((.((((.((.((..((((.((.(((..(.....)..))).))))))...)).((((((((.(((.((((((.(.(....))))))))))).))))))))))..))))))..... ( -40.50) >consensus CAAGUUGCUGGUUGCCAGUUGCUG_GUUGCC____________GUUGC__G_U__C_GGCUGCUGAUGUUGCUGUAAUGCCGUAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA ...(..(((((...)))))..)....................................((((((((.(((.((((((.(.(....))))))))))).))))))))((.........)).. (-21.81 = -21.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:08 2006