Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,766,140 – 6,766,258 |
Length | 118 |
Max. P | 0.816479 |
Location | 6,766,140 – 6,766,258 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -23.35 |
Energy contribution | -23.13 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.13 |
Mean z-score | -2.85 |
Structure conservation index | 0.78 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6766140 118 + 22224390 GGCAGGAAAACCCCGUUGAGACGCCGUGUCAGUCAGUGGCAAAGCUGAAAAUCGCUAAAGAUUAAUGAUGCAAAAAAUUGAGCAUCAUUAAAGAAAGUGAAAAUGGAAUUAAGUGCAG-- .(((((....))(((((.....((..(((((.....)))))..))......(((((.....((((((((((..........))))))))))....))))).))))).......)))..-- ( -29.20) >DroEre_CAF1 54806 118 + 1 CGCGGGAAAACCCAGUUGAGACGCCGUGUCAGUCAGUGGCAAAGCUGAAAAUCGCUAAAGAUUAAUGAUGCAAAAAAUUGAGCAUCAUUAAAGAAAGUGAAAAUGGAAUUAAGUGCAG-- .(((((....)))(.((((....((((.....(((((......)))))...(((((.....((((((((((..........))))))))))....)))))..))))..)))).)))..-- ( -31.20) >DroAna_CAF1 70684 118 + 1 GCUGGG--AACCCCGUUGAGACGUUAUGUCAGUCAACGGCAAAGCUGAAAAUCGCUUAAGAUUAAUGAUGCAAAAAAUUGAGCAUCAUUAAAGAAAGUGAAAAUGGAAUUAAGUGCAAAG (((..(--....((((((((((.....)))..))))))))..)))......((((((....((((((((((..........))))))))))...)))))).................... ( -29.30) >consensus GGCGGGAAAACCCCGUUGAGACGCCGUGUCAGUCAGUGGCAAAGCUGAAAAUCGCUAAAGAUUAAUGAUGCAAAAAAUUGAGCAUCAUUAAAGAAAGUGAAAAUGGAAUUAAGUGCAG__ ...(((....)))..((((....((((.....(((((......)))))...(((((.....((((((((((..........))))))))))....)))))..))))..))))........ (-23.35 = -23.13 + -0.21)
Location | 6,766,140 – 6,766,258 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -20.45 |
Energy contribution | -20.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6766140 118 - 22224390 --CUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGACACGGCGUCUCAACGGGGUUUUCCUGCC --..(((...((((((....((.((....((((((((((..........)))))))))).....)).))......(((.((.((.....)).)).)))........))))))....))). ( -25.10) >DroEre_CAF1 54806 118 - 1 --CUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGACACGGCGUCUCAACUGGGUUUUCCCGCG --..((..............((.((....((((((((((..........)))))))))).....)).))......(((.((.((.....)).)).))).........(((....))))). ( -23.50) >DroAna_CAF1 70684 118 - 1 CUUUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUAAGCGAUUUUCAGCUUUGCCGUUGACUGACAUAACGUCUCAACGGGGUU--CCCAGC ..............((....((.(((...((((((((((..........))))))))))....))).))............(((((((..(((.....))))))))))))..--...... ( -27.30) >consensus __CUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGACACGGCGUCUCAACGGGGUUUUCCCGCC ....(((......................((((((((((..........)))))))))).....(((........))).)))...(((..(((.....))))))...(((....)))... (-20.45 = -20.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:07 2006