Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,762,777 – 6,762,871 |
Length | 94 |
Max. P | 0.999773 |
Location | 6,762,777 – 6,762,871 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 65.27 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -18.14 |
Energy contribution | -17.37 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.24 |
Mean z-score | -2.75 |
Structure conservation index | 0.51 |
SVM decision value | 4.05 |
SVM RNA-class probability | 0.999773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6762777 94 + 22224390 ---------------------ACGCAGAGGAGCGGCAACAUGCCG-----UCGUCAGCAAUAAAUAAAGCAGCACGCAGUGUUGCCAAUGCGAUUCAAUUGCUGGCAAUCGUUCUCUAUU ---------------------....(((((((((((.....))))-----).(((((((((.......(((((((...)))))))...((.....))))))))))).....))))))... ( -32.90) >DroEre_CAF1 51400 94 + 1 ---------------------ACGCAGAGCAGCGGCAACAUGCCG-----UCGACGGCAAUAAAUAAAGCAGCACGCAGUGUUGCCAAUGCGAUCCAAUUGCUGGCAAUCGUUCUCUAUU ---------------------....((((.(((((((((((((((-----....))))..........((.....)).)))))))).....((((((.....)))..))))))))))... ( -30.30) >DroAna_CAF1 65767 120 + 1 AAGAAUGAAGCAGGGAGCCGGAGGCGGUGGGGCGGGGGAACCCCGAGGUUCCUACGCCAAUAAAAAAAAAGGGACGAGAGUUUGCCAAUGGUUUCCAAUUUCUGGCAAUUGUUCUCUAUU ..(...((((..((((((((..(((.....((((..((((((....))))))..)))).............((((....)))))))..))))))))..))))...).............. ( -43.80) >consensus _____________________ACGCAGAGGAGCGGCAACAUGCCG_____UCGACGGCAAUAAAUAAAGCAGCACGCAGUGUUGCCAAUGCGAUCCAAUUGCUGGCAAUCGUUCUCUAUU .........................((((.(((((((...)))).....................................((((((..((((.....))))))))))..)))))))... (-18.14 = -17.37 + -0.77)
Location | 6,762,777 – 6,762,871 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 65.27 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -17.51 |
Energy contribution | -15.85 |
Covariance contribution | -1.65 |
Combinations/Pair | 1.33 |
Mean z-score | -1.91 |
Structure conservation index | 0.56 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6762777 94 - 22224390 AAUAGAGAACGAUUGCCAGCAAUUGAAUCGCAUUGGCAACACUGCGUGCUGCUUUAUUUAUUGCUGACGA-----CGGCAUGUUGCCGCUCCUCUGCGU--------------------- (((((((..((((((....))))))...((((.((....)).)))).....)))))))....((.((.((-----((((.....)))).)).)).))..--------------------- ( -29.20) >DroEre_CAF1 51400 94 - 1 AAUAGAGAACGAUUGCCAGCAAUUGGAUCGCAUUGGCAACACUGCGUGCUGCUUUAUUUAUUGCCGUCGA-----CGGCAUGUUGCCGCUGCUCUGCGU--------------------- ..((((((.((((((....))))))..))(((.((((((((..((.....)).........(((((....-----))))))))))))).)))))))...--------------------- ( -32.00) >DroAna_CAF1 65767 120 - 1 AAUAGAGAACAAUUGCCAGAAAUUGGAAACCAUUGGCAAACUCUCGUCCCUUUUUUUUUAUUGGCGUAGGAACCUCGGGGUUCCCCCGCCCCACCGCCUCCGGCUCCCUGCUUCAUUCUU ....((((....(((((((.....(....)..)))))))..)))).................((((..((((((....))))))..)))).....(((...)))................ ( -32.90) >consensus AAUAGAGAACGAUUGCCAGCAAUUGGAUCGCAUUGGCAACACUGCGUGCUGCUUUAUUUAUUGCCGUCGA_____CGGCAUGUUGCCGCUCCUCUGCGU_____________________ ..(((((..((((((....)))))).........(((.....((((.((.............)))).)).......((((...))))))).)))))........................ (-17.51 = -15.85 + -1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:06 2006