Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,747,567 – 6,747,676 |
Length | 109 |
Max. P | 0.924352 |
Location | 6,747,567 – 6,747,676 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.49 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -14.56 |
Energy contribution | -15.50 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.12 |
Mean z-score | -1.71 |
Structure conservation index | 0.61 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6747567 109 + 22224390 ------CUCCGUCCCCC---UGCCUUUCGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCU--UUUUCUGGCCUCGCGCGAGGC ------((((((.....---.((((((((((.......(((((((.......))))).)).....)))))))))).(.((((...(((........)--))....)))).)))).))).. ( -33.20) >DroEre_CAF1 36823 103 + 1 ------CU-CGUCCCCC---UGCCUUUGGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCA--UUUUCUCGCCCCAUUC----- ------..-........---......((((((......(((((((.......))))).)).....(((....)))...)))))).............--................----- ( -23.60) >DroAna_CAF1 41497 116 + 1 UUAUUUCCCCAUCAACUUUUCGGCUUUGGGCUAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCC--UUUUUUGUCUGUG--CGACUC .....................(....((((((......(((((((.......))))).)).....(((....)))...))))))....)........--......(((....--.))).. ( -23.00) >DroPer_CAF1 96325 102 + 1 UCUUUUGGCCACUGCCCCUCCGG---UUGGCCUUAUUAACCUUGGUUACACUUCAAGCGUCACUUGCCCAAAC-UCGCUGCCUAUAAACAUUUCUCUCAUUUUUUG-------------- ......(((((..(((.....))---))))))....((((....)))).......((((..............-.))))...........................-------------- ( -15.46) >consensus ______CUCCAUCCCCC___CGCCUUUGGGCCAUAUUAACCUUGGUCACAUUUCAAGCGUCACUUGCCGAAAGGCCGCGGCCCAUAAACAUUUCUCU__UUUUCUGGCC_CG__C_____ ..........................((((((......(((((((.......))))).)).....(((....)))...)))))).................................... (-14.56 = -15.50 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:02 2006