Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,738,774 – 6,738,894 |
Length | 120 |
Max. P | 0.952317 |
Location | 6,738,774 – 6,738,870 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 73.69 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -24.69 |
Energy contribution | -25.50 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.46 |
Structure conservation index | 0.66 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6738774 96 + 22224390 CGAUCCGUGUCCAAC---------------------GGACUCCGG-ACUCCGGACUACCGACUCGCGACUCGCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAGUCCGGUUGAGUGG ...(((((.....))---------------------))).(((((-...)))))...((.(((((((((.....))))).((..(((((((((....)))))))))..))..)))))) ( -40.90) >DroSim_CAF1 27687 115 + 1 -GAUCC-UGUCCUACGGACUGCCGACUACGGACUACGGACUACGG-ACUACGGACUACCGACUCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAGUCCGGUUGAGUGG -..(((-.((((..(((....))).(....).....))))...))-)...(((....)))(((((((((.....))))).((..(((((((((....)))))))))..))..)))).. ( -42.10) >DroEre_CAF1 28997 94 + 1 -GAGCC-U---------------------GGACUACCGACUACCG-ACUACCGACUACCCAGUCGCGACUGCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAGUCCGGCUGAGUGG -.((((-.---------------------(((((.(.(((.....-.....(((((....))))).(((.((((((((....)))))).)).)))))).)...)))))))))...... ( -33.80) >DroYak_CAF1 34882 90 + 1 -------C---------------------GGACUACGGAGUACCAAACUACCAACUACCGACCCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAGUCGGUUUGAGUGG -------.---------------------(((((....))).))...(((((((..((((((..(((((.....))))).......(((((((....)))))))))))))))).)))) ( -33.00) >consensus _GAUCC_U_____________________GGACUACGGACUACCG_ACUACCGACUACCGACUCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAGUCCGGUUGAGUGG ......................................................(((((((((.(((((.....))))).....(((((((((....)))))))))..))))).)))) (-24.69 = -25.50 + 0.81)
Location | 6,738,793 – 6,738,894 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.71 |
Mean single sequence MFE | -36.56 |
Consensus MFE | -22.84 |
Energy contribution | -23.24 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.18 |
Mean z-score | -2.02 |
Structure conservation index | 0.62 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6738793 101 + 22224390 UCCGG-ACUCCGGACUACCGACUCGCGACUCGCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAG--UCCGGUUGAGUGGCAGGUCCUGCCCCC-----CAGUUCUC--GC ...((-(((..((.......(((((((((.....))))).((..(((((((((....))))))))--)..))..))))(((((...))))))).-----.)))))..--.. ( -39.70) >DroSim_CAF1 27725 103 + 1 UACGG-ACUACGGACUACCGACUCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAG--UCCGGUUGAGUGGCAGGUCCUGCCCCC-----CAGUCCCCCAGC ...((-(((.(((....)))(((((((((.....))))).((..(((((((((....))))))))--)..))..))))(((((...)))))...-----.)))))...... ( -42.60) >DroEre_CAF1 29014 101 + 1 UACCG-ACUACCGACUACCCAGUCGCGACUGCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAG--UCCGGCUGAGUGGCAGGUCCUGCCCCC-----CAGUUCCC--GC ....(-((..((((((....))))).).((((((.(((((....(((((((((....))))))))--)..))).)).)))))))))(((.....-----))).....--.. ( -37.30) >DroYak_CAF1 34894 102 + 1 UACCAAACUACCAACUACCGACCCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAG--UCGGUUUGAGUGGCAGCUCCUGCCCCC-----CAAUUCCC--UC ................((((((..(((((.....))))).......(((((((....))))))))--)))))(((.(.(((((...))))).).-----))).....--.. ( -32.80) >DroAna_CAF1 28918 88 + 1 --------------------AUUCGCCAGGCUGAGUU-CCCCCAGCUGAGCUGUCGUCAGUUUGGUGUCCAGUUGAGUGGCAGCUCCUGCCCCAGGACCUCCUUCUC--AC --------------------...(((((((((((...-.(..((((...))))..))))))))))))......((((.((.((.(((((...))))).))))..)))--). ( -30.40) >consensus UACCG_ACUACCGACUACCGACUCGCGACUCCCAGUUGCUCCCAGCUGAGCUGUCGUCAGCUCAG__UCCGGUUGAGUGGCAGGUCCUGCCCCC_____CAGUUCCC__GC ....................(((((((((.....)))))......((((((((....)))))))).........))))(((((...))))).................... (-22.84 = -23.24 + 0.40)
Location | 6,738,793 – 6,738,894 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 75.71 |
Mean single sequence MFE | -43.00 |
Consensus MFE | -21.96 |
Energy contribution | -22.28 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.20 |
Mean z-score | -2.08 |
Structure conservation index | 0.51 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6738793 101 - 22224390 GC--GAGAACUG-----GGGGGCAGGACCUGCCACUCAACCGGA--CUGAGCUGACGACAGCUCAGCUGGGAGCAACUGCGAGUCGCGAGUCGGUAGUCCGGAGU-CCGGA ..--.....(((-----((...(.((((.((((((((..((((.--((((((((....))))))))))))..((.((.....)).)))))).)))))))).)..)-)))). ( -45.50) >DroSim_CAF1 27725 103 - 1 GCUGGGGGACUG-----GGGGGCAGGACCUGCCACUCAACCGGA--CUGAGCUGACGACAGCUCAGCUGGGAGCAACUGGGAGUCGCGAGUCGGUAGUCCGUAGU-CCGUA .(..(....)..-----).((((.((((.((((((((..((((.--((((((((....))))))))))))..((.((.....)).)))))).))))))))...))-))... ( -50.80) >DroEre_CAF1 29014 101 - 1 GC--GGGAACUG-----GGGGGCAGGACCUGCCACUCAGCCGGA--CUGAGCUGACGACAGCUCAGCUGGGAGCAACUGGCAGUCGCGACUGGGUAGUCGGUAGU-CGGUA ((--.....(((-----((.(((((...))))).)))))((((.--((((((((....))))))))))))..)).((((((...(.(((((....))))))..))-)))). ( -47.40) >DroYak_CAF1 34894 102 - 1 GA--GGGAAUUG-----GGGGGCAGGAGCUGCCACUCAAACCGA--CUGAGCUGACGACAGCUCAGCUGGGAGCAACUGGGAGUCGCGGGUCGGUAGUUGGUAGUUUGGUA ..--.....(((-----((.(((((...))))).)))))(((((--((((.(((.((((..(((((.((....)).))))).))))))).))...)))))))......... ( -38.80) >DroAna_CAF1 28918 88 - 1 GU--GAGAAGGAGGUCCUGGGGCAGGAGCUGCCACUCAACUGGACACCAAACUGACGACAGCUCAGCUGGGGG-AACUCAGCCUGGCGAAU-------------------- ((--.((...(..((((.(((((((...))))).)).....))))..)...)).))....(((..((((((..-..))))))..)))....-------------------- ( -32.50) >consensus GC__GGGAACUG_____GGGGGCAGGACCUGCCACUCAACCGGA__CUGAGCUGACGACAGCUCAGCUGGGAGCAACUGGGAGUCGCGAGUCGGUAGUCCGUAGU_CCGUA ....(.((.((......((((((((...))))).)))..((((...((((((((....))))))))))))...........)))).)........................ (-21.96 = -22.28 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:00 2006