Locus 2528

Sequence ID X_DroMel_CAF1
Location 6,735,071 – 6,735,164
Length 93
Max. P 0.983767
window4126 window4127

overview

Window 6

Location 6,735,071 – 6,735,164
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 97.13
Mean single sequence MFE -20.86
Consensus MFE -20.01
Energy contribution -20.34
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.96
SVM decision value 0.74
SVM RNA-class probability 0.839062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6735071 93 + 22224390
AAGACCACUGCUUGCAGCACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA
.........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... ( -21.34)
>DroSec_CAF1 21285 93 + 1
AAGACCACUGCUUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA
.........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... ( -21.34)
>DroEre_CAF1 25821 93 + 1
AAAGCCACUGCCUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA
..(((((.((.((((.((((...))))..))))...)).)))))..(((.....))).(((((.......................))))).. ( -19.90)
>consensus
AAGACCACUGCUUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA
.........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... (-20.01 = -20.34 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 6,735,071 – 6,735,164
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 97.13
Mean single sequence MFE -35.03
Consensus MFE -32.97
Energy contribution -32.53
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -3.50
Structure conservation index 0.94
SVM decision value 1.95
SVM RNA-class probability 0.983767
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6735071 93 - 22224390
UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGCUGCAAGCAGUGGUCUU
....(((((..((..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....))..)))))......... ( -35.50)
>DroSec_CAF1 21285 93 - 1
UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAAGCAGUGGUCUU
....((((((..(..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....)..))))))......... ( -32.30)
>DroEre_CAF1 25821 93 - 1
UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAGGCAGUGGCUUU
..(((((.((((((((......))))))))))))).(((.....)))..((((((((...((((.(((((...))))))))).)))))))).. ( -37.30)
>consensus
UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAAGCAGUGGUCUU
....(((((..((..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....))..)))))......... (-32.97 = -32.53 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:55 2006