Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,733,872 – 6,733,980 |
Length | 108 |
Max. P | 0.520390 |
Location | 6,733,872 – 6,733,980 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.88 |
Mean single sequence MFE | -19.16 |
Consensus MFE | -0.98 |
Energy contribution | -2.58 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.05 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6733872 108 + 22224390 CAAAUGGAAGCUUCUUUCA----UUUACAUCCUGCUCUUAUUGAUUCUGAUAUC--CAUUUUUGCUUUGUUUU------GAUUUCGAUCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA .(((((((((...))))))----))).....((((.((((((((((..((.(((--.................------))).)))))))).)))).))))................... ( -19.13) >DroSec_CAF1 20095 108 + 1 CAAAUGGAAGCUUCUUUCAA---UUUACAUUCUGCUCUUAUUGAUUCUGAUAU---CAUUUUUGUUUUGUUUU------GAUUUCGACCAAUUAAGUGCAGAAUUUUUCUAUUUAAUGAA .(((((((((..........---.....(((((((.(((((((..((.((.((---((..............)------))).)))).))).)))).))))))).)))))))))...... ( -18.63) >DroSim_CAF1 23257 107 + 1 CAAAUGGAAGCUUCUUUCA----UUUACAUUCUGCUCUUAUUGAUUCUGAUAU---CAUUUUUGUUUUGUUUU------GAUUUCGACCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA .(((((((((...))))))----)))..(((((((.(((((((..((.((.((---((..............)------))).)))).))).)))).)))))))................ ( -21.14) >DroEre_CAF1 24707 96 + 1 ------------------------UUAGGCCCUGCUCUUAUUCAUUCCGAUAGUGAUAUCUAUUUUUUGUUUUCCGACCAAUUUCGACCAAUUACGUGCAGAAUUUUCCUGUUUAAUGAA ------------------------.((((..((((.(...........((((....))))..............(((......))).........).))))......))))......... ( -11.50) >DroAna_CAF1 23011 103 + 1 CAAAAGGAAAGUCCUUUGAAAAAUUUCCA------UAUCAUUAAAUAGGAAA-----AAUAGAGACUCACUUU------GAUUGCAUGCAAUUAUCAGGAGAGUUUUCCAAUUUAAUGAA .....(((((.((....))....))))).------..(((((((((.((((.-----......(((((.((((------(((((....))))))..))).))))))))).))))))))). ( -25.41) >consensus CAAAUGGAAGCUUCUUUCA____UUUACAUCCUGCUCUUAUUGAUUCUGAUAU___CAUUUUUGUUUUGUUUU______GAUUUCGACCAAUUAAGUGCAGAAUUUUCCUAUUUAAUGAA ...............................((((.((((....................................................)))).))))................... ( -0.98 = -2.58 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:54 2006