Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,731,741 – 6,731,857 |
Length | 116 |
Max. P | 0.500000 |
Location | 6,731,741 – 6,731,857 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.13 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -14.79 |
Energy contribution | -15.10 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.13 |
Mean z-score | -1.69 |
Structure conservation index | 0.59 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6731741 116 - 22224390 GGUGUCCUGUCAUUUCAUAG--UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG-AAAAGUUUCUUGUUGUCGUUGC-AGCGAUAUAAAA .(((((((((.....(((((--......((((((((((.(((.....))).))))))))))......)))))...((((((...-...))))))...........))-)).))))).... ( -27.50) >DroPse_CAF1 75448 107 - 1 ----UCCUGACGUUUUAUAG--UUU----UAUGAAUUACUGCAAAAUGCAAUAAUUUAUGCAAGUGUUUGUGUACGAAAC--AG-AAAAGUUUCUUGUUAUUGCUUCAAGCGUUAUAAAA ----...((((((((...((--(..----.((((((((.(((.....))).))))))))(((((..(((.(((.....))--).-))).....)))))....)))..))))))))..... ( -22.10) >DroEre_CAF1 22741 116 - 1 GGUGUCCUGUCAUUUCAUAG--UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG-AAAAGUUUCUUGUUGCCGUUGC-AGCGAUAUAAAA .(((.((((..(((....))--)..)))))))..((..((((((...(((((((..(((((((....))))))).((((((...-...)))))))))))))..))))-))..))...... ( -29.40) >DroYak_CAF1 28691 116 - 1 GGUGUCCUGUCAUUUCAUAG--UUCCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUUAACGAAACUGAG-AAAAGUUUCUUGUUGUCGUUGC-AGCGAUAUAAAA .(((((((((..........--......((((((((((.(((.....))).))))))))))...........((((((((.(((-((....)))))))).)))))))-)).))))).... ( -26.50) >DroAna_CAF1 21322 105 - 1 AGUGUUUUGUCAUUUCGUAAGUUUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGUGGAAAAGUUUU---------------GGGCUCAAAAA ............................((((((((((.(((.....))).)))))))))).....((((.(..(((((((.......))))))---------------)..).)))).. ( -21.80) >DroPer_CAF1 37551 107 - 1 ----UCCUGACGUUUUAUAG--UUU----UAUGAAUUACUGCAAAAUGCAAUAAUUUAUGCAAGUGUUUGUGUACGAAAC--AG-AAAAGUUUCUUGUUAUUGCUUCAAGCGUUAUAAAA ----...((((((((...((--(..----.((((((((.(((.....))).))))))))(((((..(((.(((.....))--).-))).....)))))....)))..))))))))..... ( -22.10) >consensus GGUGUCCUGUCAUUUCAUAG__UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG_AAAAGUUUCUUGUUGUCGUUGC_AGCGAUAUAAAA .......((((.................((((((((((.(((.....))).))))))))))..............((((((.......)))))).................))))..... (-14.79 = -15.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:53 2006