Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,728,674 – 6,728,773 |
Length | 99 |
Max. P | 0.550748 |
Location | 6,728,674 – 6,728,773 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.98 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -25.92 |
Energy contribution | -26.30 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6728674 99 + 22224390 CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA ...(((((((((((((((((((((.(.((((((....((((.(((........))).))))))))))-.))))))....)))))).))))))..)))).. ( -28.80) >DroSec_CAF1 13914 99 + 1 CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA ...(((((((((((((((((((((.(.((((((....((((.(((........))).))))))))))-.))))))....)))))).))))))..)))).. ( -28.80) >DroEre_CAF1 19673 99 + 1 CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGCUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA ...((((((((((((((....(((((((((...(((.((((.(((........))).)))).))).)-))).....))))))))).))))))..)))).. ( -30.20) >DroYak_CAF1 20604 100 + 1 CCUUCGCAUUUGCUCCUUUUUUCGCCGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGAGGACGAAGAAGCGAAGGACACAAGUGAUUGACA (((((((..........(((((((((.((((((....((((.(((........))).)))))))))))).))))))))))))))...(((....)))... ( -33.70) >consensus CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA_GACGAAAAAGCGAAGGACACAAGUGAUUGACA ...(((((((((((((((((((((.(.((((((....((((.(((........))).)))))))))).).)))))....)))))).))))))..)))).. (-25.92 = -26.30 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:52 2006