Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,709,091 – 6,709,187 |
Length | 96 |
Max. P | 0.710927 |
Location | 6,709,091 – 6,709,187 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -25.27 |
Energy contribution | -25.17 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.95 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.710927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6709091 96 + 22224390 AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGCAGAGAGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC ...(((..((((.((((((.((((.(((..........))))))).)).)))).))))..((....))...((((((....))))))...)))... ( -28.70) >DroSec_CAF1 11544 96 + 1 AAGCCUAAUUGACCUCUUGGACAUUAGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAAGACAUUGGAGAAGGAGC ...(((..((((((..(((.((((.......(((....))))))).)))..)).))))..((....))...((((((....))))))...)))... ( -23.41) >DroSim_CAF1 13118 96 + 1 AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC ...(((..((((.(((((..((((((((..........)))).)))).))))).))))..((....))...((((((....))))))...)))... ( -27.90) >consensus AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC ...(((..((((.((((((.((((.(((..........))))))).)).)))).))))..((....))...((((((....))))))...)))... (-25.27 = -25.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006