Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,704,374 – 6,704,467 |
Length | 93 |
Max. P | 0.520895 |
Location | 6,704,374 – 6,704,467 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -22.73 |
Energy contribution | -22.73 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.83 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6704374 93 - 22224390 AUCACCGGGGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCUCAGGAGAUUUUGGUUGACACCCCGUUAUACAUAG .....(((((.((..(((((((((((((((((((..(............)..)))))))))))))).)))))..))..))))).......... ( -31.60) >DroSec_CAF1 6857 91 - 1 AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGUUAUACAUAG .....(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))).......... ( -25.30) >DroSim_CAF1 8664 91 - 1 AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGUUAUACAUAG .....(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))).......... ( -25.30) >consensus AUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU__GGAGAUUUUGGUUGACACCCCGUUAUACAUAG .....(((((.((..(((.((((((..(((((((..(............)..)))))))..))))))..)))..))..))))).......... (-22.73 = -22.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:50 2006