Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,699,513 – 6,699,606 |
Length | 93 |
Max. P | 0.737660 |
Location | 6,699,513 – 6,699,606 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 67.01 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -8.24 |
Energy contribution | -10.20 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.13 |
Mean z-score | -1.72 |
Structure conservation index | 0.47 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6699513 93 - 22224390 -------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAUAGAAAAAGAAGACGCUAGAGCGAACAGAAAUGGCUGGCGAAUUAAA -------..............(((((((.((..............((((....)))).........(((....))).........)).)))))))..... ( -18.40) >DroSec_CAF1 2209 93 - 1 -------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAACAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUAAUA -------..............(((((((.((..............((((((................))))))............)).)))))))..... ( -17.26) >DroSim_CAF1 3464 93 - 1 -------AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUUAAA -------..............(((((((.((..............((((((................))))))............)).)))))))..... ( -17.26) >DroEre_CAF1 4295 100 - 1 AGUAUGUACACUCCAUUCAUUUUUGCCACCCUUCCAAAAAAUCAAUCUUGCAAGAGAAAAAGAAGACGCUAGAGUAAACAAAAAUGGCUGGCGAAUUAAA ..........(.(((..((((((((..((.((.............((((....)))).............)).))...))))))))..))).)....... ( -13.57) >DroMoj_CAF1 6525 93 - 1 -------GUUUGUAUUUUAAUGCUGGGGUGACUCUGCAAGAGAAGAGAAGAAGAAUUUCUUUCACCAUGAGGAAGAUAAAGGCCAGACCAAAGUAUAGAU -------(((((((((((....(((((((((((((........))))(((((....)))))))))).(.....)........))))...))))))))))) ( -20.60) >consensus _______AGACUCCAUUCAAUUUUGCCACCCUUCCAAAAAAUCAAUCUAGCAAGAGAAAAAGAAGACGCUAGAGCAAACAAAAAUGGCUGGCGAAUUAAA .....................(((((((.((..............((((((................))))))............)).)))))))..... ( -8.24 = -10.20 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:49 2006