Locus 2521

Sequence ID X_DroMel_CAF1
Location 6,696,521 – 6,696,625
Length 104
Max. P 0.609963
window4119

overview

Window 9

Location 6,696,521 – 6,696,625
Length 104
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.53
Mean single sequence MFE -26.34
Consensus MFE -17.98
Energy contribution -17.57
Covariance contribution -0.41
Combinations/Pair 1.33
Mean z-score -1.21
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.609963
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6696521 104 + 22224390
-----CUA-UGCUUUUGCAGUCAGUUACAAUUGGUUGUACUGGAAACCGAUCUCUGCGCCGGAUCCCAUCUCCGAAACGCUGUCCAUCAGCCUAAUUGGAUCUUACUGCU
-----...-.......(((((.((...((((((((((...((((...........(((.((((.......))))...)))..)))).))))).)))))...)).))))). ( -29.02)
>DroVir_CAF1 7 101 + 1
-----CUU-UC---UUGCAGUUACCUACAAUUGGCUGUACUGGAAACCGAUAUCGGCGCCCGAUCCCAUAUCGGAGAGCAUGUCCAUUAGCCUCAUCGGCUCCUACUGUU
-----.((-((---(((((((((........))))))))..)))))(((((((.((........)).)))))))..((((.((.....((((.....))))...)))))) ( -24.70)
>DroGri_CAF1 4377 108 + 1
U-UGUCCA-UCAUUUUGCAGUCAACUACAAUUGGUUAUACUGGAAGCCGAUCUCGGCGCCUGAUCCCAUUGCGGACAACAUUUCCAUCAGUCUAAUUGGUUCCUACUGCU
.-......-.......(((((......(((((((......(((((((((....))))...((.(((......)))))....))))).....)))))))......))))). ( -27.90)
>DroEre_CAF1 1351 106 + 1
-CC--CUA-CGCUUUUGCAGUCAGUUACAAUUGGUUGUAUUGGAAACCGAUCUCUGCGCCGGAUCCCAUCUCCGAAACGCUGUCCAUCAGCCUGAUUGGAUCCUACUGUU
-..--...-.......(((((..((....(((((((........)))))))....))...((((((.(((........((((.....))))..))).)))))).))))). ( -26.40)
>DroMoj_CAF1 1344 109 + 1
UCUUUCUU-UCUCUUCGCAGUCAACUACAAUUGGUUGUAUUGGAAGCCGAUUUCUGCGCCCGAUCCCAUAUCGGAGAGCAUGUCCAUUAGCCUUAUUGGUUCCUACUGUU
........-.......(((((......((((.(((((...((((.((.(....).))(((((((.....)))))...))...)))).)))))..))))......))))). ( -24.20)
>DroAna_CAF1 1285 108 + 1
-CUU-CUGUUCCUGUUGCAGUGAGCUAUAAUUGGUUGUACUGGAAACCGAUCUCUGCACCGGAUCCCAUAUCCGAAUCGUUAUCCAUAAGCCUGAUUGGCUCCUACUGUU
-...-...........(((((((((((.....((((....((((...((((........(((((.....))))).))))...))))..))))....))))))..))))). ( -25.80)
>consensus
__U__CUA_UCCUUUUGCAGUCAGCUACAAUUGGUUGUACUGGAAACCGAUCUCUGCGCCGGAUCCCAUAUCCGAAACCAUGUCCAUCAGCCUAAUUGGAUCCUACUGUU
................(((((......((((((((((...((((....(....).....((((.......))))........)))).))))).)))))......))))). (-17.98 = -17.57 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:48 2006