Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,695,997 – 6,696,117 |
Length | 120 |
Max. P | 0.823701 |
Location | 6,695,997 – 6,696,117 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 63.06 |
Mean single sequence MFE | -48.07 |
Consensus MFE | -27.69 |
Energy contribution | -29.88 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.30 |
Mean z-score | -1.26 |
Structure conservation index | 0.58 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6695997 120 - 22224390 AACGCUCCAGGGCCACGCCCAUGCUGGGCAAUCGCGUUGGCCGGGCGAAAAUGGGACGCAGGAGUCGCGCGGGCAGCAUGCGAUUGCAGCGCCAAAGAUUGUGCGCCUGCUGGGUCCAGC .........((((...))))..(((((((((((((((((.(((.((((...((.....))....)))).))).))))..))))))(((((((((.....)).))).))))...))))))) ( -55.50) >DroSec_CAF1 6037 120 - 1 AACGCUCCAGGGCCACGCCCAUGCUGGGCAAUCGCGUUGGCCGGGCGAAAAUGGGACGCAGGAGUCGCGCGGGCAGCAUGCGAUUGCAGCGCCAAAGAUUGUGCGCCUGCUGGGUCCAGC .........((((...))))..(((((((((((((((((.(((.((((...((.....))....)))).))).))))..))))))(((((((((.....)).))).))))...))))))) ( -55.50) >DroWil_CAF1 5188 102 - 1 ------------------CCAAACUUGGCAGAUUAUUUUGGCGGGAAUAUUAGUUUUGUUUAUGCUUGCAUUAGUGGCCGUUGGCCUAACAAUGCUAAUUGGAUGCAGUCUGAGUGACGA ------------------((((.((((.((((....)))).))))....(((((.(((((...(((......)))((((...)))).))))).))))))))).....(((.....))).. ( -26.20) >DroYak_CAF1 6161 120 - 1 AACGCUCCAGGGCCACGCCCAUGCUGGGCAAUCGCGUUGGCCUUGCGAAAAUGGGACGCAAAAGGCGCGCGGGCAGCAUGCGGUUGCAGCGCCAAAGAUUGUGCGCCUGCUGGGUCGAGC ...(((((((((((((((...(((...)))...))).)))))))).........(((.((..((((((((((((.((.(((....))))))))......)))))))))..)).))))))) ( -55.10) >consensus AACGCUCCAGGGCCACGCCCAUGCUGGGCAAUCGCGUUGGCCGGGCGAAAAUGGGACGCAGAAGUCGCGCGGGCAGCAUGCGAUUGCAGCGCCAAAGAUUGUGCGCCUGCUGGGUCCAGC ...(((....)))...(((((.((.((((((((((((((.(((.((((...((.....))....)))).))).))))..)))))))).((((........)))).)).)))))))..... (-27.69 = -29.88 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:47 2006