Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,692,383 – 6,692,493 |
Length | 110 |
Max. P | 0.637761 |
Location | 6,692,383 – 6,692,493 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.97 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -21.65 |
Energy contribution | -20.32 |
Covariance contribution | -1.33 |
Combinations/Pair | 1.46 |
Mean z-score | -1.25 |
Structure conservation index | 0.66 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6692383 110 + 22224390 UCUAAUUCACU-----UUCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCGGGUCGCCAGCAAUCGGGCAUCAUCCAAGGUGUACACCUGAGCUUUCUGGCGGCCAACACAA ...........-----....((((.(((....))).))))..............(((((((((...(((((...(((.....)))....))))).....)))))))))....... ( -29.20) >DroVir_CAF1 2724 106 + 1 UAUAAUGU-UC-----GCCA---ACAGGAUGAUUUGGAAUGUGCAUCCAAUAGUGGACGACAGCAGUCGGGCAUGAUUCAGGGCGUGCAUUUGAGUUUUCUGGCCGGCAACACCA .....(((-(.-----(((.---.(((((.((((..((.((..(..(((((.(((..((((....))))..))).)))..))..)..))))..)))))))))...)))))))... ( -33.10) >DroPse_CAF1 2701 111 + 1 ACUCAUUGGCUUCGUAUCCA----CAGGACGACCUGGACUGUGCCUCCAACUCGGGUCGCAACCAGUCUGGAAUCAUCCAGGGCGUCCACCUGAGCUUUAUGGCGGGCAACACCA ..((((.(((((.((....)----).(((((.((((((.((....(((((((.((.......))))).))))..)))))))).)))))....)))))..)))).((......)). ( -36.10) >DroEre_CAF1 2518 110 + 1 UCAAAUUCACU-----UCCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCCGGCCGCCAGCAAUCGGGCAUCAUCCAAGGCGUACACCUGAGCUUCCUGGCGGCCAAUACCA ...........-----....((((.(((....))).))))..............(((((((((...(((((......(....)......))))).....)))))))))....... ( -29.20) >DroYak_CAF1 2533 110 + 1 UCUAAUUUACU-----GCCAAAUUCAGGACGACCUCGAUUGCGCUUCCAACUCGGGCCGCCAGCAAUCGGGCAUCAUCCAAGGUGUACACCUGAGCUUCCUGGCGGCCAACACCA ...........-----(((((.((.(((....))).))))).))..........(((((((((...(((((...(((.....)))....))))).....)))))))))....... ( -33.80) >DroPer_CAF1 2721 111 + 1 ACUCAUUGGCUUCGUAUCCA----CAGGACGACCUGGACUGUGCCUCCAACUCGGGUCGCAACCAGUCUGGAAUCAUCCAGGGCGUCCACCUGAGCUUCAUGGCGGGCAAUACCA ..((((.(((((.((....)----).(((((.((((((.((....(((((((.((.......))))).))))..)))))))).)))))....)))))..)))).((......)). ( -35.60) >consensus UCUAAUUCACU_____UCCA___UCAGGACGACCUCGAUUGCGCUUCCAACUCGGGUCGCCAGCAAUCGGGCAUCAUCCAAGGCGUACACCUGAGCUUCCUGGCGGCCAACACCA .................((.....(((((((.((((((((((((..((......))..))..)))))))((......)).))))))...)))).(((....)))))......... (-21.65 = -20.32 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:46 2006