Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,687,473 – 6,687,624 |
Length | 151 |
Max. P | 0.648116 |
Location | 6,687,473 – 6,687,590 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.97 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -17.04 |
Energy contribution | -16.80 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.68 |
Structure conservation index | 0.76 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6687473 117 - 22224390 CGAUAUCUAUUUUUGGAUUUACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAGAAUGUAUAUUCACAUUGAAUGU--ACUAAUCAACUUAUAU .......((((..((((.(((((...))))).))))..))))..........((((((((......))).............((((((((.....))))))--))....)))))..... ( -27.60) >DroSec_CAF1 598 115 - 1 CGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACCUAAUAGUUGGGCAAAUAAGCCGAAUACCAAAAAUGU--AUUCACAUUGUAUGU--ACUAAUCACCUAAUAU .(((...((((..((((...(((...)))...))))..)))).(((..((((.....(((......)))((((((.......))--))))..))))..)))--....)))......... ( -20.30) >DroSim_CAF1 634 115 - 1 CGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAAAAUGU--AUUCACAUUGUGUGU--ACUAAUCACCCAAUAU .(((...((((..((((...(((...)))...))))..)))).((((.((((.....(((......)))((((((.......))--))))..)))).))))--....)))......... ( -23.60) >DroEre_CAF1 592 117 - 1 CGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGUACUUAAUACUUGGGUAAAUAAGCCGAAUACCAAGAAUCU--AAUCGCAUUGUAUGUAUAUUUAUCACUUUAUAU .((((..(((..((((((((......((((.(((......((((((.....))))))(((......))))))))))..))))))--))..((((...)))))))..))))......... ( -20.00) >DroYak_CAF1 653 115 - 1 CGAUAUCUAUUUUUGGAUUCAACAAGGGUAAUUCCAUUAAUAAGUACUUAAUAGUUGGGUAAAUAAGCCGAAUACCCAGAAUGC--AUUCACAUUGUAUGU--AUUUAUGACUAAAUAU .((.(((((....))))))).....(((....)))....((((((((.......(((((((...........))))))).((((--(.......)))))))--)))))).......... ( -21.10) >consensus CGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAGAAUGU__AUUCACAUUGUAUGU__ACUAAUCACCUAAUAU .((....(((((((((((((.....(((....)))......................(((......))))))).))))))))).....))............................. (-17.04 = -16.80 + -0.24)
Location | 6,687,511 – 6,687,624 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.07 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -19.92 |
Energy contribution | -19.84 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.76 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6687511 113 - 22224390 U------GCCUGUCUAAUGGAAGUCAUUGUCCAAUUUGUUCGAUAUCUAUUUUUGGAUUUACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAG (------((.(((.((((((((...((((..(.....)..))))...(((((((((.....))))))))).))))))))))).))).......(((.(((......))).)))...... ( -26.20) >DroSec_CAF1 634 113 - 1 U------GCCUGUCUAAUGGAAGCCAUUGUCCAAUUUGUUCGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACCUAAUAGUUGGGCAAAUAAGCCGAAUACCAAA (------((.(((.((((((((...((((..(.....)..))))...(((((((((.....))))))))).))))))))))).))).......(((.(((......))).)))...... ( -26.20) >DroSim_CAF1 670 113 - 1 U------GCCUGUCUAAUGGAAGCCAUUGUCCAAUUUGUUCGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAA (------((.(((.((((((((...((((..(.....)..))))...(((((((((.....))))))))).))))))))))).))).......(((.(((......))).)))...... ( -26.20) >DroEre_CAF1 630 119 - 1 UGUGUAUGUUUGUUUAAUGGAACCCAUUGUCCAAUUUGUUCGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGUACUUAAUACUUGGGUAAAUAAGCCGAAUACCAAG ((.((((((((((((((((((((((((((..(.....)..))))........((((.....))))))))...)))))...((((((.....))))))..)))))))))...)))))).. ( -25.00) >DroYak_CAF1 689 113 - 1 U------GUCUGUCCAGUGGCAGGCAUUGUCCAACUUGUUCGAUAUCUAUUUUUGGAUUCAACAAGGGUAAUUCCAUUAAUAAGUACUUAAUAGUUGGGUAAAUAAGCCGAAUACCCAG (------(((((((....))))))))((..((((((((((.((.(((((....))))))))))))(((....)))..................)))))..))................. ( -27.20) >consensus U______GCCUGUCUAAUGGAAGCCAUUGUCCAAUUUGUUCGAUAUCUAUUUUUGGAUUCACCAAGGGUAAUUCCAUUAAUAAGCACUUAAUAGUUGGGCAAAUAAGCCGAAUACCAAG .......((.(((.((((((((...((((..(.....)..))))...(((((((((.....))))))))).))))))))))).))........(((.(((......))).)))...... (-19.92 = -19.84 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:43 2006