Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,685,720 – 6,685,828 |
Length | 108 |
Max. P | 0.968243 |
Location | 6,685,720 – 6,685,828 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 60.33 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -12.30 |
Energy contribution | -13.18 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.24 |
Mean z-score | -2.07 |
Structure conservation index | 0.47 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6685720 108 - 22224390 AUCCCGCCCCCUUUUGGGGUCAUAAAUUUAAAAAUAAGUAUGCUCGCA--UAAUG-GGCGCUUGUACUGCGAGCACUCAGUUUUUUUCACCCCGAAACGCUGACAGU-------GCUA ....(((((((....))))..............((((((..(((((..--...))-)))))))))...)))((((((((((...((((.....)))).)))))..))-------))). ( -30.80) >DroSec_CAF1 15487 95 - 1 AUCCCACC-CCUUUUGGGGCCAUAAAUUUAAAAAUAAGUAUGCUCGCA--UAAUG-GGCGCUUGCACUGCAAGCACUCACUU-UUUUCUCCCCGAAA------------------CUA ........-..((((((((...................((((....))--)).((-((.((((((...)))))).))))...-......))))))))------------------... ( -24.80) >DroYak_CAF1 15177 97 - 1 UUCCCACC-CCU-UUGGGGCCAUAAAUUUAAAAAUAAGUAUGCUCACA--UAAUG-GCCGCUUGUAGUGUGAGCACU---------UUUCCCCGAAACGCCGGCAGU-------GCUA ....(((.-(((-((((((......(((((....))))).((((((((--(.(..-(....)..).)))))))))..---------...))))))).....))..))-------)... ( -23.90) >DroAna_CAF1 15975 101 - 1 GACUCGUU-UCU-UGCCGGCAAUCAGUCUAAAUAUAAA--CGCCUACAUUUAAUGAGGCGUUUGU----UGGGCAUU---------UUCUCUUGCUUUGUUCGGUUUGUUUUAGACUC ((.((...-.(.-.((((((((...........(((((--(((((.(((...)))))))))))))----..((((..---------......))))))).)))))..).....)).)) ( -24.90) >consensus AUCCCACC_CCU_UUGGGGCCAUAAAUUUAAAAAUAAGUAUGCUCACA__UAAUG_GGCGCUUGUACUGCGAGCACU_________UCUCCCCGAAACGCUGGCAGU_______GCUA .............((((((......(((((....)))))..(((((((..(((........)))...)))))))...............))))))....................... (-12.30 = -13.18 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:41 2006