Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,684,102 – 6,684,222 |
Length | 120 |
Max. P | 0.998207 |
Location | 6,684,102 – 6,684,222 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -35.74 |
Energy contribution | -35.30 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -4.33 |
Structure conservation index | 0.99 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6684102 120 + 22224390 GUAAACGAUGUAGCGGUUGCAUUCAAUCCAAUCUACAUAAUACGUACAUACAUAUUGCUUUGAGUUUUCCAUAGCCGCUGCAUCGUUUACAACCAGUCUGCAAUGUCUGCCGACACCGAA (((((((((((((((((((.((((((..((((.....................))))..))))))......))))))))))))))))))).....(((.(((.....))).)))...... ( -39.80) >DroSec_CAF1 13843 115 + 1 GUAAACGAUGCACCGGUUGCAUUCAAUCCAACCUACAU---ACGUACAUA--UAUUGCUUUGAGUUUUCCAUAGCCGCUGCAUCGUUUACAACCAGUCAGCAAUGUCUGCCGACACCGAA ((((((((((((.((((((.((((((..(((..(((..---..)))....--..)))..))))))......)))))).)))))))))))).....(((.(((.....))).)))...... ( -35.10) >DroEre_CAF1 13606 111 + 1 GUAAACGGUGCAGCGGUUGCAUUCAAUCCAACCUUCAU-------ACAUA--UAUUGCUUUCAGUUUUCCUUAGCCGCUGCAUCGUUUACAACCAGUUUGCAAUGUCUGCCGAUACCGAA (((((((((((((((((((((.................-------.....--...)))....((.....)).)))))))))))))))))).....(((.(((.....))).)))...... ( -32.41) >DroYak_CAF1 13577 111 + 1 GUAAACGGUGCAGCGGUUGCAUUCAAUCCAACCUACAU-------ACAUA--UAUUGCUUUGAGUUUUCCUUAGCCGCUGCAUCGUUUACAACCAGUUUGCAAUGUCUGCCGAUUCCGAA (((((((((((((((((((.((((((..(((..((...-------...))--..)))..))))))......)))))))))))))))))))....((((.(((.....))).))))..... ( -37.20) >consensus GUAAACGAUGCAGCGGUUGCAUUCAAUCCAACCUACAU_______ACAUA__UAUUGCUUUGAGUUUUCCAUAGCCGCUGCAUCGUUUACAACCAGUCUGCAAUGUCUGCCGACACCGAA (((((((((((((((((((.((((((..(((.......................)))..))))))......))))))))))))))))))).....(((.(((.....))).)))...... (-35.74 = -35.30 + -0.44)
Location | 6,684,102 – 6,684,222 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -34.95 |
Consensus MFE | -28.75 |
Energy contribution | -31.50 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.82 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6684102 120 - 22224390 UUCGGUGUCGGCAGACAUUGCAGACUGGUUGUAAACGAUGCAGCGGCUAUGGAAAACUCAAAGCAAUAUGUAUGUACGUAUUAUGUAGAUUGGAUUGAAUGCAACCGCUACAUCGUUUAC ..(((((((....)))))))..........((((((((((.(((((((.(((.....))).)))(((((((....))))))).((((............))))..)))).)))))))))) ( -34.30) >DroSec_CAF1 13843 115 - 1 UUCGGUGUCGGCAGACAUUGCUGACUGGUUGUAAACGAUGCAGCGGCUAUGGAAAACUCAAAGCAAUA--UAUGUACGU---AUGUAGGUUGGAUUGAAUGCAACCGGUGCAUCGUUUAC ......((((((((...)))))))).....((((((((((((.(.(((.(((.....))).))).(((--(((....))---)))).(((((.((...)).)))))).)))))))))))) ( -40.80) >DroEre_CAF1 13606 111 - 1 UUCGGUAUCGGCAGACAUUGCAAACUGGUUGUAAACGAUGCAGCGGCUAAGGAAAACUGAAAGCAAUA--UAUGU-------AUGAAGGUUGGAUUGAAUGCAACCGCUGCACCGUUUAC .(((((....((((...))))..)))))..(((((((.((((((.(((.((.....))...)))....--.....-------.....(((((.((...)).))))))))))).))))))) ( -33.50) >DroYak_CAF1 13577 111 - 1 UUCGGAAUCGGCAGACAUUGCAAACUGGUUGUAAACGAUGCAGCGGCUAAGGAAAACUCAAAGCAAUA--UAUGU-------AUGUAGGUUGGAUUGAAUGCAACCGCUGCACCGUUUAC .((((.....((((...))))...))))..(((((((.((((((.(((...((....))..)))....--.....-------.....(((((.((...)).))))))))))).))))))) ( -31.20) >consensus UUCGGUAUCGGCAGACAUUGCAAACUGGUUGUAAACGAUGCAGCGGCUAAGGAAAACUCAAAGCAAUA__UAUGU_______AUGUAGGUUGGAUUGAAUGCAACCGCUGCACCGUUUAC ..(((((((....)))))))..........((((((((((((((.(((.(((.....))).))).......................(((((.((...)).))))))))))))))))))) (-28.75 = -31.50 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:38 2006