Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,683,759 – 6,683,849 |
Length | 90 |
Max. P | 0.535378 |
Location | 6,683,759 – 6,683,849 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -18.22 |
Consensus MFE | -11.98 |
Energy contribution | -14.40 |
Covariance contribution | 2.42 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.66 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6683759 90 + 22224390 UCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUAUUGUAUAUAUAUCCUAUAUAUG-AUAUAUAUGCAUGGUGUAUGGGGUGUAUA .......(((......))).......((((.(((((((((((((((((((((........)-)))))))))))..))))))))).)))).. ( -22.60) >DroSec_CAF1 13510 89 + 1 CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA-UGUAUAUAUAUCCUAUAUAUG-AUAUAUACGCAUGGUGUAUGGGGUGUAUA .......(((......)))(((((...............-)))))(((((((((((((((.-((........)).))))))))))))))). ( -18.56) >DroEre_CAF1 13309 75 + 1 CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA-UAUAUA---------------UCUAUAUAUGCAUGGUGUAUGGGGUGUAUA ...(((((.(.((((((.....)...(((.((.((((((-((....---------------..)))))))).)).)))))))).)))))). ( -13.50) >consensus CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA_UGUAUAUAUAUCCUAUAUAUG_AUAUAUAUGCAUGGUGUAUGGGGUGUAUA .......(((......))).......((((.((((((((.(((((((((((.(.......).)))))))))))...)))))))).)))).. (-11.98 = -14.40 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:36 2006