Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,670,098 – 6,670,214 |
Length | 116 |
Max. P | 0.678850 |
Location | 6,670,098 – 6,670,214 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -30.19 |
Energy contribution | -30.59 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.21 |
Mean z-score | -1.80 |
Structure conservation index | 0.70 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6670098 116 + 22224390 G---GUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAACGCACUGCUGCUGCGCAACAUGAACCAUGUUGUGGGCAAAGGGCAGCCAGUGGUCCAAAAUCACCGAAAGGCUUACCA .---.(((((((((...((..((((((((((((((....))))).))))((((.(((((((((...)))))))))))))....)))))..(((((.....)))))))...))))))))) ( -49.90) >DroSec_CAF1 1676 113 + 1 GGUGGUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAAUGCACU------GCGCAACAUGAACCAUGAUAUUGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA .....(((((((((...((..((((((((((((((....))))).))------))))))).((.(((((....(((.(....).)))...))))).)).......))...))))))))) ( -46.00) >DroSim_CAF1 1996 113 + 1 GGUGGUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAGUGCACU------GCGCAACAUGAACCAUGAUAUUGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA .....(((((((((...((..((((((((((((........))).))------))))))).((.(((((....(((.(....).)))...))))).)).......))...))))))))) ( -44.00) >DroEre_CAF1 1675 116 + 1 G---GAGGUAAGACGCACGAGGUUGCGCAGGCGUUCGCCAACACACUGCUGCUGCGUAACAUGAACCAUGAUGUGGGCAAAGGGCAGGCAGGCGCCCCUAGCCAUCGGAAGGUUUACAA .---...(((((.(...(((((((((((.(((....)))......((((((((((.((.((((...))))...)).))....)))).))))))))....)))).)))...).))))).. ( -36.40) >DroYak_CAF1 2065 116 + 1 G---GGGGUAAGGUGCACGAUGUUGCGCAGGCGUUCGCCAACACACUGCUGCUGCGCAACAUGAACCAUGAUGUGAGCAAAGGGCAGGCUGGAGCUCAAAAUCAUAGGAAGGUUUACCA .---..((((((.(.....(((((((((((((....)))..((......)).))))))))))...(((((((.(((((...((.....))...)))))..))))).))..).)))))). ( -38.20) >consensus G___GUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAACGCACUGCUGCUGCGCAACAUGAACCAUGAUGUGGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA ......((((((((((.....(((((((((((....))).............)))))))).....((((...))))))...((((........)))).............)))))))). (-30.19 = -30.59 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:32 2006