| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 846,913 – 847,019 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 846,913 – 847,019 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.75 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -13.57 |
| Energy contribution | -14.35 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 846913 106 + 22224390 UCGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUAGCUGCACUGCUC-UGGC-CUGCACCCAUUUACCUCUCAAAAAUGAAUGUAAGGCGAUUUGACCCUUAAACC------------ (((((((((((((((((((((((......))))..))))))))....))-))))-.((((..(((((.........)))))..)))).)))))...............------------ ( -28.80) >DroSec_CAF1 48675 120 + 1 UAGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUAGCUGCACUUAUAGUGCCGCUGAACCCAUUCACCUCUCAAAAAUGAAUGUAAGGCGAUUUGACCCUUAAACAUCGGGUUUAAAA .....((((((((((((((((((......))))..)))))))...........((((.....((((((...........))))))...)))))))))))..((((((.....)))))).. ( -26.60) >DroSim_CAF1 45174 107 + 1 UCGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUAGCUGCACUUCUAGUGCC-CUGAACCCAUUCACCUCUCAAAAAUGAAUGUAAGGCGAUUUGACCCUUAAACC------------ (((((.((((..(((((((((((......))))..)))))))((.....))...-))))...((((((...........))))))...)))))...............------------ ( -23.50) >DroEre_CAF1 48546 107 + 1 UCGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUAGCUGCACUGUUCGUGCC-CUGAACCCAUUUGCCUCUAAAAAAUGAAUCUAAGGCGAUUUGACCCUUAAACC------------ (((((...(((((((((((((((......))))..)))))))...(((((....-.))))).(((((.........))))).))))..)))))...............------------ ( -23.50) >DroYak_CAF1 46380 107 + 1 UCGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUGGCUGCACUGCUCGUGCC-CUGAACCCAUUUACCUCUAAAAAAUGAAUCUAAGGCGAUUUGACCCUUCAACC------------ (((((.((((.((((((((((((......))))..))))))))..((....)).-))))...(((((.........))))).......))))).((((....))))..------------ ( -23.30) >DroAna_CAF1 52400 97 + 1 AGGCAGUCACUUGCAGUUAAGUACACAAUUAUUAAUAGCAACGCGUCU-------UUAAUUCCAUUUAUUUUACGGAAAUGAUUCCA-UGAGAUUUGACGUGUGA--------------- ...........(((.(((((...........))))).)))(((((((.-------............((((((.((((....)))).-))))))..)))))))..--------------- ( -17.76) >consensus UCGCCGUCAGAUGCAGUUAAGUAUACAAUUAUUAAUAGCUGCACUGCUCGUGCC_CUGAACCCAUUUACCUCUCAAAAAUGAAUCUAAGGCGAUUUGACCCUUAAACC____________ (((((......((((((((((((......))))..))))))))...................(((((.........))))).......)))))........................... (-13.57 = -14.35 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:59 2006