Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,668,288 – 6,668,380 |
Length | 92 |
Max. P | 0.847629 |
Location | 6,668,288 – 6,668,380 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -24.55 |
Energy contribution | -25.63 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.07 |
Mean z-score | -1.51 |
Structure conservation index | 0.76 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6668288 92 + 22224390 UUGGCACGACCAGAUUAUGGCCUUUUGGGCCAUAAAACAGGUACGAGGCGGAAUAGUCGGCCGGCCGUCCGUCCGAGUGGGUGACAUUCCUG ...((.(((((...((((((((.....))))))))....))).))..))(((((.((((.((.((((......)).)).))))))))))).. ( -35.20) >DroSim_CAF1 173 92 + 1 UUGCCACGACCAGAUUAUGGCCUGUUGGGCCAUAAAACAGGUACGAGACGGAAUGGUCGGCCAGCCGUCCGUCCGAGUGGGUGACAUUCCUG ...((((.(((...((((((((.....))))))))....))).((.((((((.((((......)))))))))))).))))............ ( -36.50) >DroYak_CAF1 250 76 + 1 UUGGCACGACCAGAUUAUGGCCUUUUGGGCCAUAAAACAGGUAUCAGGCGG--------G--------CCGGCUGAGUGGGUGACAUUCCUG ((((.....)))).((((((((.....))))))))..((((..((((.((.--------.--------.)).))))...(....)...)))) ( -25.60) >consensus UUGGCACGACCAGAUUAUGGCCUUUUGGGCCAUAAAACAGGUACGAGGCGGAAU_GUCGGCC_GCCGUCCGUCCGAGUGGGUGACAUUCCUG ......(((((...((((((((.....))))))))....))).)).((((((.((((......)))))))))).(((((.....)))))... (-24.55 = -25.63 + 1.09)
Location | 6,668,288 – 6,668,380 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -21.07 |
Energy contribution | -21.43 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.69 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6668288 92 - 22224390 CAGGAAUGUCACCCACUCGGACGGACGGCCGGCCGACUAUUCCGCCUCGUACCUGUUUUAUGGCCCAAAAGGCCAUAAUCUGGUCGUGCCAA ..((((((((..((....)).(((....)))...))).)))))((..((.(((....((((((((.....))))))))...))))).))... ( -32.30) >DroSim_CAF1 173 92 - 1 CAGGAAUGUCACCCACUCGGACGGACGGCUGGCCGACCAUUCCGUCUCGUACCUGUUUUAUGGCCCAACAGGCCAUAAUCUGGUCGUGGCAA ..((((((((..(((..((......))..)))..)).))))))(((.((.(((....((((((((.....))))))))...))))).))).. ( -37.30) >DroYak_CAF1 250 76 - 1 CAGGAAUGUCACCCACUCAGCCGG--------C--------CCGCCUGAUACCUGUUUUAUGGCCCAAAAGGCCAUAAUCUGGUCGUGCCAA ..((........))........((--------(--------.((((.(((........(((((((.....)))))))))).)).)).))).. ( -21.90) >consensus CAGGAAUGUCACCCACUCGGACGGACGGC_GGCCGAC_AUUCCGCCUCGUACCUGUUUUAUGGCCCAAAAGGCCAUAAUCUGGUCGUGCCAA ......((.(((......((.(((((((....))).....)))).))...(((....((((((((.....))))))))...))).))).)). (-21.07 = -21.43 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:31 2006