Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,667,080 – 6,667,200 |
Length | 120 |
Max. P | 0.500000 |
Location | 6,667,080 – 6,667,200 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -48.18 |
Consensus MFE | -28.61 |
Energy contribution | -29.45 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.30 |
Mean z-score | -1.70 |
Structure conservation index | 0.59 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6667080 120 - 22224390 CCAACUUGUCGGCGGCAUUGUACAGCGCCCAGAAGUUGGGUGCCCAGUAGGCGUGCGUUAGGCCACGCUUGAAAGGAAACAGACGGGAGAGGACUUGCGGCAAUUGCUGCCAGAAGGGUC ...(((..(((((((((((((...((((((((...))))))))((..((((((((.(.....)))))))))...)).......((.(((....))).)))))).))))))).))..))). ( -47.00) >DroVir_CAF1 623 120 - 1 CCACCUUAUCGGCAGCAUUAUAGAGCGCCCAAAUAUUGGGCGCCCAGUAGGCGUGGGUAAGUCCGCGCUUAAACGGAAACAGGCGAGACAUCAGCUGUGGCAAUUGGUGCCAGAAGGGGC ((.((((...((((.((...((.((((((((.....)))))(((...((((((((((....))))))))))...(....).))).........))).)).....)).))))..)))))). ( -50.30) >DroPse_CAF1 1504 120 - 1 CCACCUUGUCGGCGGUGUUGUAGAGCGCCCAUAUGUUGGGGGCCCAGUAGGCGUGCGUGAGUCCCCGAUUGAAGGGGAACAGGCGGGACAUAAUCUGCGGCAGCUGAUUCCAGAAUGGGC (((.((.((((((..(((((((((((.((((.....)))).))......(.(.(((.((..(((((.......))))).)).))).).)....)))))))))))))))...))..))).. ( -47.10) >DroGri_CAF1 620 120 - 1 CCACUUUAUCGGCGGUGUUAUAGAGGGCCCAGAUAUUGGGUGCCCAAUAGGCGUGGGUGAGGCCACGCUUGAAAGGAAAGAGGCGCGACAUCAGCUGUGGCAACUGCUGCCAGAAGGGGC ((.((((..((((((((((((((.((((((........)).))))..(((((((((......))))))))).......................))))))).)))))))...)))))).. ( -45.70) >DroMoj_CAF1 437 120 - 1 CCACCUUAUCGGCGGCAUUAUAGAGUGCCCAAAUGUUGGGCGCCCAGUAGGCGUGUGUGAGGCCGCGCUUGAAGGGGAACAGGCGCGACAUCAGCUGCGGCAACUGCUGCCAGAAGGGGC ((.((((...(((((((.........(((((.....)))))(((((((.(((.(.....).)))(((((((........))))))).......)))).)))...)))))))..)))))). ( -54.40) >DroAna_CAF1 758 120 - 1 GCACCUUAUCGGCGCUAUUGUACAAAGCCCAGAAGUUGGGCGCCCAGUAGGCGUGAGUCAGUCCCCGCUUGAAGGGAAACAAGCGGGAGAGCACCUGCGGAAUCUGCUCAAAGAAGGGUC ..(((((.((.((.((((((......((((((...))))))...)))))))).((((.(((((((((((((........)))))))).))((....)).....)))))))..))))))). ( -44.60) >consensus CCACCUUAUCGGCGGCAUUAUAGAGCGCCCAGAUGUUGGGCGCCCAGUAGGCGUGCGUGAGGCCACGCUUGAAGGGAAACAGGCGGGACAUCAGCUGCGGCAACUGCUGCCAGAAGGGGC ...(((..((.((((.........(((((((.....)))))))((..((((((((........))))))))...))..................))))((((.....)))).))..))). (-28.61 = -29.45 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:30 2006