Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,666,150 – 6,666,250 |
Length | 100 |
Max. P | 0.543840 |
Location | 6,666,150 – 6,666,250 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -18.84 |
Energy contribution | -18.77 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.28 |
Mean z-score | -1.74 |
Structure conservation index | 0.62 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6666150 100 - 22224390 CUUGAAAGCGGGCAGAAUGCGAUUGUCGAUUGUGCCGGCUAAAUGUGGCUUGGAAGUAGCCAGUUAGCCCGACUAAAAGCUAUCGUUAUCGGGCUGUCCA ......(((.((((.(((.((.....))))).)))).))).....(((((.......)))))..((((((((.....(((....))).)))))))).... ( -34.10) >DroSec_CAF1 14943 91 - 1 CUUGAAAGCGGGCAGAAUGCAAUUGUC---------GGCUAAAUUUGGCUUGGAAGUAGCCAGGUGGCCUGACUAAUGGCUAUCGUUAUCGGGCUAUACA ......(((.(((((.......)))))---------.)))....((((((.......))))))(((((((((.(((((.....))))))))))))))... ( -30.50) >DroSim_CAF1 21518 91 - 1 CUUAAAAGCGGGCAGAAUGCGAUUGUC---------GGCUAAAUUUGGCUUGGAAGUAGCCAGGUGGCCUGACUAAUGGCUAUCGUUAUCGGGCUAUACA ......(((.(((((.......)))))---------.)))....((((((.......))))))(((((((((.(((((.....))))))))))))))... ( -30.50) >DroYak_CAF1 17251 100 - 1 CUUGAAAGUGGACGAAAUGCGAUUAUCGAUGGUGCAAGCUAGAUCUGGCUUGGAAGUAGCCAGGUAGCCCAAAUAAAAGCUAUCGUUAUCGAACUGGCCA ........(((........((((...(((((((....(((..((((((((.......)))))))))))..........)))))))..))))......))) ( -26.28) >consensus CUUGAAAGCGGGCAGAAUGCGAUUGUC_________GGCUAAAUUUGGCUUGGAAGUAGCCAGGUAGCCCGACUAAAAGCUAUCGUUAUCGGGCUAUACA (((((.(((((((((.......))))).........(((((...((((((.......)))))).)))))..............)))).)))))....... (-18.84 = -18.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:29 2006