Locus 2503

Sequence ID X_DroMel_CAF1
Location 6,650,734 – 6,650,844
Length 110
Max. P 0.505666
window4092

overview

Window 2

Location 6,650,734 – 6,650,844
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 95.15
Mean single sequence MFE -29.90
Consensus MFE -29.81
Energy contribution -29.37
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.28
Structure conservation index 1.00
SVM decision value -0.05
SVM RNA-class probability 0.505666
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6650734 110 + 22224390
UCCAUACUUGCUAAAUGUAUUAUUAUUUAUAUUCGGUUAUCGGCUAUUGUUUGCCCUAUCGGAUUUGGAUGACGAUGAGUCAGGAGCGGCGGGCAAGACGAUAACAAACU
...........((((((......))))))......(((((((....(((((((((((....((((((........))))))...)).)))))))))..)))))))..... ( -27.30)
>DroSim_CAF1 1962 110 + 1
UCCAUACUUGUUAAAUGUAUUAUUAUUUAUAUUCGGUUAUCGGCUAUUGUUUGCCCUAUCGGAUUCGGAUGACGAUGAGUCAGGAGCGGCGGGCAAGGCGAUAACAAACU
.........(((.((((((........))))))..(((((((.((..((((((((((....((((((........))))))...)).)))))))))).))))))).))). ( -31.30)
>DroYak_CAF1 1934 106 + 1
----UACUUGCUAAAUGUAUUAUUAUUUAUAUUCGGUUAUCGGCUAUUGUUUGCCCUAUCGGAUUCGGAUGACGAUGAGUCAGGAGCGGCGGGCAGGGCGAUAACAAACU
----.......((((((......))))))......(((((((.((..((((((((((....((((((........))))))...)).)))))))))).)))))))..... ( -31.10)
>consensus
UCCAUACUUGCUAAAUGUAUUAUUAUUUAUAUUCGGUUAUCGGCUAUUGUUUGCCCUAUCGGAUUCGGAUGACGAUGAGUCAGGAGCGGCGGGCAAGGCGAUAACAAACU
...........((((((......))))))......(((((((.((..((((((((((....((((((........))))))...)).)))))))))).)))))))..... (-29.81 = -29.37 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:24 2006