Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,649,313 – 6,649,410 |
Length | 97 |
Max. P | 0.562528 |
Location | 6,649,313 – 6,649,410 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 92.79 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -25.00 |
Energy contribution | -25.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.95 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6649313 97 - 22224390 ---UUUUUUCGCUUUUCCUU----CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA ---.....(((((((...((----(...((((((((....((((((((.((.((.....))))....)))))))).)))))))).)))...)))))))...... ( -26.70) >DroSim_CAF1 531 104 - 1 UUCUUUUCUCGCUUUUCCUUUCCUUAUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA ........(((((((....(((.....(((((((((....((((((((.((.((.....))))....)))))))).))))))))))))...)))))))...... ( -25.30) >DroYak_CAF1 516 97 - 1 ---UUUUCUCGCUUUUCCUU----CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUUCAAAGCGGCGGCAA ---.....(((((((...((----(...((((((((....((((((((.((.((.....))))....)))))))).)))))))).)))...)))))))...... ( -26.60) >consensus ___UUUUCUCGCUUUUCCUU____CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA ..........(((.(..(((......((((((((((....((((((((.((.((.....))))....)))))))).))))))))))......)))..).))).. (-25.00 = -25.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:23 2006