Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,641,105 – 6,641,196 |
Length | 91 |
Max. P | 0.999972 |
Location | 6,641,105 – 6,641,196 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 70.02 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -17.15 |
Energy contribution | -19.27 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.25 |
Mean z-score | -2.97 |
Structure conservation index | 0.71 |
SVM decision value | 5.07 |
SVM RNA-class probability | 0.999972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6641105 91 + 22224390 AAUG----CUUUUGGUUAUUCAAAAAUGUUUUUGGACACUCAUCAUC---------AUGAUGAUAAGCCAUGUUGUACAUACAUAUAUGUAUGACGAAUGAUCU ....----.....((((((((...........(((....(((((...---------..)))))....))).((..((((((....))))))..)))))))))). ( -25.10) >DroSec_CAF1 34928 88 + 1 AAUG----CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUUAGUCG----------AUGAUAAGCCAUGUUGUACAUAU--GUAUGUAUGACGAAUGAUCU ....----.....((((((((...........(((....(((((....)----------))))....))).((..(((((..--..)))))..)))))))))). ( -21.60) >DroSim_CAF1 32748 98 + 1 AAUU----CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUCAGUCGGAAGGCGAUGAUGAUAAGCCAUGUUGUACAUAC--GUAUGUAUGACGAAUGAUCU ....----.....((((((((...........(((....(((((((((....)))..))))))....))).((..(((((..--..)))))..)))))))))). ( -30.40) >DroEre_CAF1 28644 93 + 1 AAUGUGUAUUCCUGGGUAUUCCAAAU----UUCGGACACUCAUUAGUCAUA-GUUAUUGGCGAUAAGCCAUAUACCAUAC------ACAAAUCAUGAAUAAUCG ..(((((((...(((((..(((....----...))).))))).........-((...((((.....))))...)).))))------)))............... ( -19.20) >consensus AAUG____CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUCAGUCG_______AUGAUGAUAAGCCAUGUUGUACAUAC__GUAUGUAUGACGAAUGAUCU .............((((((((............((....((((((((........))))))))....))..((((((((((....)))))))))))))))))). (-17.15 = -19.27 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:22 2006