Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 840,837 – 840,957 |
Length | 120 |
Max. P | 0.803389 |
Location | 840,837 – 840,957 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -35.90 |
Consensus MFE | -25.94 |
Energy contribution | -27.02 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.13 |
Mean z-score | -2.29 |
Structure conservation index | 0.72 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 840837 120 + 22224390 AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCGGAUUCUGGGGCUGAUGAUACGUUUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUUGUCU ......(((((.(((.((((.........((((((....))))))...(((((.(((((.......))))).....(((((....))))).)))))))))..)))))))).......... ( -32.80) >DroSec_CAF1 41703 120 + 1 AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCUGAUUCUGGGGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUCGUCU ..........((((((..((((.......(((.(((((..........))))).)))(((((((...((....)).)))))))..))))..))))))((..(((...)))..))...... ( -35.70) >DroSim_CAF1 37960 120 + 1 AAUCCACUUGAAGGAUGCCACAAUCUUUUGUUUGCUCCUGCUGAUUCUGGCGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGCUCUCCUCGAGGUCCUCGUCU ......(((((((((.((.((((....))))..))))))((..(...((((((.((.(((((((...((....)).))))))))).))))))...)..)).....))))).......... ( -32.60) >DroEre_CAF1 41274 120 + 1 AAUCCACUCGAAGGAUGCCACAAUCUUUCGCCAGCUCCUGCUGAUUCUGGGGCUGAGGAUGCGUCUUCAUCCUUGUACGCAUCUUUGUUCAGUCCUUGGUCCUCCUCGAGGUCCUUGUCU ........((((((((......)))))))).((((....)))).....((((((((((((((((...((....)).))))))))....)))))))).((.((((...)))).))...... ( -42.90) >DroYak_CAF1 38874 120 + 1 AAUCCACUCGGAGGAUGCCACAAUCUGUCGUCAGCUCCUGCUGAUUCUGCUCCUGCUGAUGCGUCUUCAUCCUUGUACGCAACUCUGUGCAGUCCCUGGUCCUCCUCCAAGUCCUUGUCU .....(((.((((((.((((....((((.((((((....((.......))....))))))((((...((....)).))))........))))....))))..)))))).)))........ ( -35.50) >consensus AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCUGAUUCUGGGGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUUGUCU ..........((((((..((((.......((((((....))))))............(((((((...((....)).)))))))..))))..))))))((.((((...)))).))...... (-25.94 = -27.02 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:58 2006