Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,639,765 – 6,639,873 |
Length | 108 |
Max. P | 0.995539 |
Location | 6,639,765 – 6,639,873 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.77 |
Mean single sequence MFE | -30.84 |
Consensus MFE | -24.60 |
Energy contribution | -25.28 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.11 |
Mean z-score | -2.91 |
Structure conservation index | 0.80 |
SVM decision value | 2.59 |
SVM RNA-class probability | 0.995539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6639765 108 - 22224390 UUUUCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGUCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------GU----ACAUAAAU ........((((...(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))..........)------))----)....... ( -32.10) >DroSec_CAF1 33612 112 - 1 UUUGUAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAACCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------AUAUGUACAUAAAU ..((((.(((.......(((((.(((((.(((((....)))))..))))).)))))..(((..(((((((.....)))))))..)))...........------.))).))))..... ( -28.70) >DroSim_CAF1 31380 108 - 1 UUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------AU----ACAUAAAU ...((..........(((((((.(((((.(((((....)))))..))))).))))))).((..(((((((.....)))))))..))))..........------..----........ ( -33.20) >DroEre_CAF1 27327 117 - 1 UUUGCAAAUACAACUGCGGUGUGUCACAAGUGAGAGC-UUUGUGGUGUGAAACACAGACGAUUUGAUCACCAAAAUUGGUCAUUUCGCGACACUGUAUAUGCAUAUAUGUACAUAUGU ...(((.(((((.(((.(.((..((((((((....))-.))))))..))...).))).(((..((((((.......))))))..)))......))))).)))((((((....)))))) ( -32.30) >DroYak_CAF1 29627 112 - 1 UUUGCAAAUACAACUGCGGUGUGUCACAAAUGAGUGCCUUUGUGCUGUGAAACACAGCCGAUUUGAUCACCAAAAUUGGUCAUUUCGCUACACUUUAU------AUAUGUACAUAUGU ..((((........))))((((((.(((...(((((.......((((((...))))))(((..((((((.......))))))..)))...)))))...------...))))))))).. ( -27.90) >consensus UUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU______AUAUGUACAUAAAU ...............(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))............................... (-24.60 = -25.28 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:19 2006