Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,636,248 – 6,636,340 |
Length | 92 |
Max. P | 0.917257 |
Location | 6,636,248 – 6,636,340 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -12.50 |
Consensus MFE | -0.40 |
Energy contribution | -1.20 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.03 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6636248 92 + 22224390 CUA-----ACACUUUUGGCCUGCCACUCUCAG--UGCAAUUUCUUUCACUUUUCAAGUGCAAUUU--GGCGC-UCUUUU---CUUU-GAUUUUUC-AUCAUCCAUCC--- ...-----.......(((....))).....((--(((.........((((.....))))......--.))))-).....---...(-(((.....-)))).......--- ( -10.29) >DroSec_CAF1 30159 93 + 1 CUA-----ACACUUU-UGCCUG-CACUUUCGG--UGCAAUAUCUUUCACUUUUCAAGUGCAAUUU--GGCGC-UCUUUU---CUUU-GAUUUUUC-ACCAUCCAUCAAUC ...-----.......-.(((((-(((((..((--((.((.....))))))....)))))))....--)))..-......---...(-((....))-)............. ( -14.30) >DroEre_CAF1 23769 83 + 1 CAA-----ACACUUU-G--CUG-CACUUUCAG--UGCAAUUUCUUUCACUU-UCAAGAGCAAUUU--GGCGC-UCUUUU---CUUUGCAUUUUU--UUCA-CCA------ ...-----......(-(--(((-(((.....)--)))).............-..((((((.....--...))-))))..---....))).....--....-...------ ( -15.40) >DroYak_CAF1 26043 95 + 1 CAC-----ACACUUU-G--CUG-CACUUCCAG--GGCAAUUUCUUUCACUU-UCAAGUGCAAUUUUCUGCGC-UCGUUUUUCCUUUUGAUUUUUC-ACCA-CCAUCAAUC ...-----.....((-(--((.-.........--)))))............-...((((((......)))))-)...........(((((.....-....-..))))).. ( -9.40) >DroAna_CAF1 31710 90 + 1 CAAUAACCGCACUUU-G--UUG-CACUUUCUGUGUGCAAUUUCUUUCGCUU-UCAAGAGCAAUUU--CCACCAGAUUUU---CUAUCUAUAUUUCUUUUU---------- ...............-(--(((-(((.......))))))).......((((-....)))).....--.....((((...---..))))............---------- ( -13.10) >consensus CAA_____ACACUUU_G__CUG_CACUUUCAG__UGCAAUUUCUUUCACUU_UCAAGUGCAAUUU__GGCGC_UCUUUU___CUUU_GAUUUUUC_AUCA_CCAUC____ ........................................................((((........))))...................................... ( -0.40 = -1.20 + 0.80)
Location | 6,636,248 – 6,636,340 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -17.16 |
Consensus MFE | -5.04 |
Energy contribution | -5.40 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.25 |
Mean z-score | -2.00 |
Structure conservation index | 0.29 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6636248 92 - 22224390 ---GGAUGGAUGAU-GAAAAAUC-AAAG---AAAAGA-GCGCC--AAAUUGCACUUGAAAAGUGAAAGAAAUUGCA--CUGAGAGUGGCAGGCCAAAAGUGU-----UAG ---.......((((-.....)))-)...---.....(-((((.--...((((((((....((((.((....)).))--))..)))).)))).......))))-----).. ( -17.40) >DroSec_CAF1 30159 93 - 1 GAUUGAUGGAUGGU-GAAAAAUC-AAAG---AAAAGA-GCGCC--AAAUUGCACUUGAAAAGUGAAAGAUAUUGCA--CCGAAAGUG-CAGGCA-AAAGUGU-----UAG ..(((((.......-.....)))-))..---......-..(((--..(((.((((.....))))...)))..((((--.(....)))-))))).-.......-----... ( -16.70) >DroEre_CAF1 23769 83 - 1 ------UGG-UGAA--AAAAAUGCAAAG---AAAAGA-GCGCC--AAAUUGCUCUUGA-AAGUGAAAGAAAUUGCA--CUGAAAGUG-CAG--C-AAAGUGU-----UUG ------...-....--..((((((....---..((((-(((..--....)))))))..-............(((((--(.....)))-)))--.-...))))-----)). ( -17.60) >DroYak_CAF1 26043 95 - 1 GAUUGAUGG-UGGU-GAAAAAUCAAAAGGAAAAACGA-GCGCAGAAAAUUGCACUUGA-AAGUGAAAGAAAUUGCC--CUGGAAGUG-CAG--C-AAAGUGU-----GUG ..(((((..-(...-..)..)))))............-(((((.....((((((((..-.((.(.((....)).).--))..)))))-)))--.-....)))-----)). ( -17.20) >DroAna_CAF1 31710 90 - 1 ----------AAAAAGAAAUAUAGAUAG---AAAAUCUGGUGG--AAAUUGCUCUUGA-AAGCGAAAGAAAUUGCACACAGAAAGUG-CAA--C-AAAGUGCGGUUAUUG ----------...........(((((..---...)))))....--.((((((.(((..-...(....)...((((((.......)))-)))--.-.))).)))))).... ( -16.90) >consensus ____GAUGG_UGAU_GAAAAAUC_AAAG___AAAAGA_GCGCC__AAAUUGCACUUGA_AAGUGAAAGAAAUUGCA__CUGAAAGUG_CAG__C_AAAGUGU_____UUG ......................................((((......((((((((.....((((......)))).......))))).))).......))))........ ( -5.04 = -5.40 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:18 2006