Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,635,315 – 6,635,419 |
Length | 104 |
Max. P | 0.937226 |
Location | 6,635,315 – 6,635,419 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -40.74 |
Consensus MFE | -34.28 |
Energy contribution | -33.88 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.16 |
Mean z-score | -1.62 |
Structure conservation index | 0.84 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6635315 104 + 22224390 CUGGCACCGCUGGGAUACGGAUUCCGAUUCCGAUUCGGUUUCGGACUCGGAUGUGGCGGCAAUUGCUUGACCGUGUACGAAUAGAAAUGCCAGCGGUCGGCGAG ((.((((((((((.((......(((((.(((((.......))))).)))))(((((((((((....))).)))).)))).......)).))))))))..)).)) ( -42.20) >DroSec_CAF1 29242 104 + 1 CUGGCACUGCUGGGAUACGGAUUCCGAUUCCGAUUCGGUUUCGGACUCGGAUGCGGCGGCAAUUGCUUGACCGUGUACGAAUAGAAAUGCCAGCGGUCGGCGAG ((.((((((((((.((.((.((.((((.(((((.......))))).)))))).))(((((((....))).))))............)).))))))))..)).)) ( -40.90) >DroSim_CAF1 27005 104 + 1 CUGGCACUGCUGGGAUACGGAUUCCGAUUCCGAUUCGGUUUCGGACUCGGAUGCGGCGGCAAUUGCUUGACCGUGUACGAAUAGAAAUGCCAGCGGUCGGCGAG ((.((((((((((.((.((.((.((((.(((((.......))))).)))))).))(((((((....))).))))............)).))))))))..)).)) ( -40.90) >DroEre_CAF1 22962 104 + 1 CUGGCACUGUUCAGAUACGGAUUCCGAUUCGGUUUUGGACUCGGACUCGGAUGCGGUGGCAAUUGCUUGACCGUGUACGAAUAAAAAUGCCAGCGGUCGGCCAG ((((((.(((((..((((((..((((((((((((...))).)))).))))).(((((....)))))....))))))..)))))....)))))).((....)).. ( -36.10) >DroYak_CAF1 25216 104 + 1 CUGGCACUGCUGGGAUACGGAUUCCGAUUCGGUUUCGGACUUGGACUCGGAUGCGGUGGCAAUUGCUUGACCGUGUACGAAUAGAAAUGCCAGCGGUCGGCCAG (((((((((((((.((.(.((.(((((.......))))).)).)..(((.((((((((((....)))..))))))).)))......)).))))))))..))))) ( -43.60) >consensus CUGGCACUGCUGGGAUACGGAUUCCGAUUCCGAUUCGGUUUCGGACUCGGAUGCGGCGGCAAUUGCUUGACCGUGUACGAAUAGAAAUGCCAGCGGUCGGCGAG ((.((((((((((.((.(.((..((((.......))))..)).)..(((.(..(((.(((....)))...)))..).)))......)).))))))))..)).)) (-34.28 = -33.88 + -0.40)
Location | 6,635,315 – 6,635,419 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -29.62 |
Energy contribution | -30.10 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.50 |
Structure conservation index | 0.90 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6635315 104 - 22224390 CUCGCCGACCGCUGGCAUUUCUAUUCGUACACGGUCAAGCAAUUGCCGCCACAUCCGAGUCCGAAACCGAAUCGGAAUCGGAAUCCGUAUCCCAGCGGUGCCAG ...((..((((((((...........((...(((.(((....))))))..)).(((((.(((((.......))))).))))).........))))))))))... ( -36.90) >DroSec_CAF1 29242 104 - 1 CUCGCCGACCGCUGGCAUUUCUAUUCGUACACGGUCAAGCAAUUGCCGCCGCAUCCGAGUCCGAAACCGAAUCGGAAUCGGAAUCCGUAUCCCAGCAGUGCCAG ...........((((((((.((....((((.(((.(((....)))))).....(((((.(((((.......))))).)))))....))))...)).)))))))) ( -34.90) >DroSim_CAF1 27005 104 - 1 CUCGCCGACCGCUGGCAUUUCUAUUCGUACACGGUCAAGCAAUUGCCGCCGCAUCCGAGUCCGAAACCGAAUCGGAAUCGGAAUCCGUAUCCCAGCAGUGCCAG ...........((((((((.((....((((.(((.(((....)))))).....(((((.(((((.......))))).)))))....))))...)).)))))))) ( -34.90) >DroEre_CAF1 22962 104 - 1 CUGGCCGACCGCUGGCAUUUUUAUUCGUACACGGUCAAGCAAUUGCCACCGCAUCCGAGUCCGAGUCCAAAACCGAAUCGGAAUCCGUAUCUGAACAGUGCCAG ..((....)).((((((((((((...((((.(((((((....)))..)))).....((.(((((.((.......)).))))).)).)))).)))).)))))))) ( -27.70) >DroYak_CAF1 25216 104 - 1 CUGGCCGACCGCUGGCAUUUCUAUUCGUACACGGUCAAGCAAUUGCCACCGCAUCCGAGUCCAAGUCCGAAACCGAAUCGGAAUCCGUAUCCCAGCAGUGCCAG (((((..((.(((((.......(((((....(((((((....)))..))))....))))).....(((((.......))))).........))))).))))))) ( -30.70) >consensus CUCGCCGACCGCUGGCAUUUCUAUUCGUACACGGUCAAGCAAUUGCCGCCGCAUCCGAGUCCGAAACCGAAUCGGAAUCGGAAUCCGUAUCCCAGCAGUGCCAG ...........((((((((.((....((((.(((((((....)))..))))..(((((.(((((.......))))).)))))....))))...)).)))))))) (-29.62 = -30.10 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:16 2006