Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,631,468 – 6,631,571 |
Length | 103 |
Max. P | 0.769605 |
Location | 6,631,468 – 6,631,571 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.41 |
Mean single sequence MFE | -50.53 |
Consensus MFE | -47.53 |
Energy contribution | -47.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.94 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6631468 103 + 22224390 CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGUUGACCGGCGGACGCAGUAUGCGGAUGGUGAUUGAGGUGAU ((((((.......))))))(((((((((((.(((.((((..(.....)..)))).))).......((((.....(((.....)))..)))))))))))).))) ( -48.40) >DroEre_CAF1 19174 103 + 1 CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU ((((((.......))))))(((((((((((((((.((((..(.....)..)))).))).((.((((((.((....)).).).)))).)).))))))))).))) ( -51.60) >DroYak_CAF1 21434 103 + 1 CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU ((((((.......))))))(((((((((((((((.((((..(.....)..)))).))).((.((((((.((....)).).).)))).)).))))))))).))) ( -51.60) >consensus CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU ((((((.......))))))(((((((((((((((.((((..(.....)..)))).)))............((..(((.....)))..)).))))))))).))) (-47.53 = -47.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:15 2006