Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,625,277 – 6,625,369 |
Length | 92 |
Max. P | 0.950903 |
Location | 6,625,277 – 6,625,369 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -32.34 |
Consensus MFE | -19.86 |
Energy contribution | -20.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.61 |
Structure conservation index | 0.61 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.950903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6625277 92 - 22224390 GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAGUAGUGAUGCCAAUUUGGCU ((((....))))(.((((((..(((.(((((((((....))----------------------)------)))))).))).(((....))))))))).).........(((.....))). ( -32.90) >DroSec_CAF1 19210 92 - 1 GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAACAGUGAUGCCAAUUUGGCU ((((....))))...((((((((((.(((((((((....))----------------------)------)))))).))).(((....)))....)))))))......(((.....))). ( -34.10) >DroSim_CAF1 17040 92 - 1 GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAUCAGUGAUGCCAAUUUGGCU ((((....))))..((((((..(((.(((((((((....))----------------------)------)))))).))).(((....)))))))))(((((...))))).......... ( -33.00) >DroEre_CAF1 13322 114 - 1 GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGAGCGUAAAAUGUGCUUAAGAUUUA------UUGUUUGAAGGUUCGAGAGAGGCAACGGUAGUAGUGAUGCCAAUUUGGCU ((((....))))...(((((..(((.(((((((......(((((.......))))).......)------)))))).))).(((....))))))))............(((.....))). ( -28.02) >DroYak_CAF1 13593 120 - 1 GCUUUUUAGUGUGAGGUUGCGGCUUGAAGCGGUUUGAGAGAGCGCAAAAUGUGCUUCAGAUUGAGAUUGUUUGUUUGAAGGUUCGAGAGAGGCAACAGUAGCAGUGAUGCCAAUUUGGCU .....(((.(((...(((((..(((((((((.(((....))))))........((((((((...........)))))))).))))))....)))))....))).))).(((.....))). ( -33.70) >consensus GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA______________________A______UUGUUUGAAGGUUCGAGAGAGGCAACCGCAGCAGUGAUGCCAAUUUGGCU ((((....))))(.((((((..(((.((((((......................................)))))).))).(((....))))))))).).........(((.....))). (-19.86 = -20.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:13 2006