Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,624,335 – 6,624,430 |
Length | 95 |
Max. P | 0.838550 |
Location | 6,624,335 – 6,624,430 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -10.50 |
Energy contribution | -10.78 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -2.23 |
Structure conservation index | 0.42 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6624335 95 - 22224390 AUUGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGUAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGAAUUUUGCAUGUGAGAAGUGCACAGAUAUAA .((((((....))))))(((--(..(((.......)))..))))..((((-----------------(.......(((.((((....)))).)))......)))))........ ( -23.32) >DroSec_CAF1 18268 88 - 1 AUUGAUCGAAAGAUCGAGAGUGUUGAUGUGCAGAUUGAAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGCAUUCU---UGUGAGAAGUGCACAG------ ...((((....))))((((((((((.(((...(((((...((....)).)-----------------))))....)))..)))))))))---)(((.......)))..------ ( -26.40) >DroSim_CAF1 16093 88 - 1 AUUGAUCGAAAGAUCGAGAGUGUUGAUGUGCAGAUUGAAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGCAUUCU---UGUGAGAAGUGCACAG------ ...((((....))))((((((((((.(((...(((((...((....)).)-----------------))))....)))..)))))))))---)(((.......)))..------ ( -26.40) >DroEre_CAF1 12382 107 - 1 --UGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGAAGGCUUAAGUGCUGAUCGAACGCAACGGAAAUUGAAAACGGGGAGCCUUUU---UGUGAGAAGUACACAGAUAAAA --.((((....))))....(--(((.(((...((((...(((......)))))))..))))))).............((....))..((---((((.......))))))..... ( -23.30) >DroYak_CAF1 12646 107 - 1 --GGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGAAGGCUUAAGUGCUGAUCGACCGCAACGGAAAUUGAAAUCGGGGAGCAUUUU---UGUGAAAAGUGCACAGAUAUAA --.((((....))))....(--(((..(((..((((...(((......))))))))))..))))..........(((...(.(((((((---.....))))))).).))).... ( -24.90) >consensus AUUGAUCGAAAGAUCGAGAG__UUGAUGUCCAGAUUGAAGGCUUAAGUGC_________________AAUUGAAAACGGGCAGCAUUUU___UGUGAGAAGUGCACAGAUA_AA ...((((....)))).........(((((((.........((......))...................(((....)))))).)))).....((((.......))))....... (-10.50 = -10.78 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:09 2006